Gene detail

Detail information of GWHGAAZE022675

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011021594.1	6.6045E-149	PREDICTED: transcription factor bHLH30-like [Populus euphratica]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	3E-102	Transcription factor bHLH30
trEMBL	tr\|B9HIY4\|B9HIY4_POPTR	6E-149	Basic helix-loop-helix family protein {ECO:0000313\|EMBL:EEE88800.1}
TAIR10	AT1G68810.1	1E-68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76632695	76635361	-
GWHAAZE00000006	mRNA	76632695	76635361	-
GWHAAZE00000006	exon	76632695	76633138	-
GWHAAZE00000006	exon	76634849	76635361	-
GWHAAZE00000006	CDS	76634849	76635361	-
GWHAAZE00000006	CDS	76632695	76633138	-

Transcript Sequence
>GWHTAAZE022705 ATGCATAATAATAACAATCTTCAAGGCCTTCACGAACAATTCTTTCTCCAACAGATGCAACAACAACAACAACAACAAAACGGCGACGTTTATTCCGAAGCTGGTGGGGGTAGTAGTAGTAGGTCAGGCTTGATCTTCCCTGAGGTCTCACCAATCTTACCATGGACTCTCCCTCCGGTTCACAACTTTAACCCGGTTCACTTTCCTACAAACCCCGATCCGTTCCAGTACGGAGGGTTGTTCAACCGCAGGCCACCAGGGCTCCAGTTTGGGTACGAAGGCACAGGTTCGGACCACCTGAGGTTCATATCGGACACACAGCTGGTTCATCAACCGGGTTTGGGTCCGTTTGGGATCCAAGCAGAGATGATGGGTAAGATGAGTGCACAAGAGATAATGGATGCAAAGGCTCTAGCTGCTTCAAAGAGCCACAGTGAAGCTGAAAGGAGGCGTAGAGAGAGAATCAATAATCATCTTGCTAAGTTGCGCAGCTTACTACCCAGCACCACCAAAACGGACAAGGCTTCATTGCTAGCTGAAGTGATACAACACGTGAAGGAGCTTAAGCGTCAAACTTCGATTATAGCTGAAACAAATCCGGTCCCCACTGAGATGGACGAATTGACGGTTGATAATGCATCCGATGAAGACGGTAGGTTTGTGATCAAAGCCTCACTTTGCTGCGAAGACCGGTCCGATCTTTTACCTGAACTAGTCAAGACCTTGAAAGCACTTAGACTTAAAACACTGAAAGCTGAAATAACAACACTTGGCGGACGTGTTAAGAATGTTCTGTTCATTACTGGGGATGAAGACTCAAACATGGAGGATCATCAACAACAATACTCAATAAGTTCGATACAAGAAGCCCTTAAATCGGTGATGGAGAAAACCAACGGTGAGGATTCTTCCTCAGGGAGTGTTAAGAGACAAAGAACCAACATCAATATCCTTTAA

Network for GWHGAAZE022675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	142	188	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.367
	SRR3591706	second leaf	8.598
	SRR3591707	mature leaf	0.825
	SRR3591708	Shoot apex	14.307
	SRR3591709	Stem	6.178
	SRR3591710	White floral bud	0.429
	SRR3591711	White flower	0.745
	SRR3591712	Green floral bud	0.746
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.818
	SRR8316896	Juvenile bud stage	6.026
	SRR8316897	Juvenile bud stage	1.900
	SRR8316894	Third green stage	1.211
	SRR8316900	Third green stage	0.901
	SRR8316901	Third green stage	1.312
	SRR8316898	Complete white stage	0.079
	SRR8316899	Complete white stage	0.775
	SRR8316903	Complete white stage	0.353
	SRR8316902	Silver flowering stage	0.202
	SRR8316904	Silver flowering stage	0.037
	SRR8316905	Silver flowering stage	0.125
	SRR8316906	Gold flowering stage	0.476
	SRR8316907	Gold flowering stage	0.581
	SRR8316908	Gold flowering stage	0.181
SRP132670	SRR6706286	Control	0.892
	SRR6706287	Light intensity 50%	1.223
	SRR6706288	Light intensity 20%	1.559
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.052
	CNS0095593	Slightly white alabastrum(diploid) 2	2.779
	CNS0095594	Slightly white alabastrum(diploid) 3	2.038
	CNS0095595	Whole white alabastrum(diploid) 2	0.814
	CNS0095596	Whole white alabastrum(diploid) 3	0.460
	CNS0095597	Whole white alabastrum(diploid) 4	0.431
	CNS0095598	Silvery flower (diploied) 1	0.356
	CNS0095599	Silvery flower (diploied) 2	0.314
	CNS0095600	Silvery flower (diploied) 3	0.564
	CNS0095601	Golden flower (diploid) 1	0.209
	CNS0095602	Golden flower (diploid) 2	0.482
	CNS0095603	Golden flower (diploid) 3	0.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.575
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.386
	CNS0095610	Silvery flower (tetraploid) 1	0.276
	CNS0095611	Silvery flower (tetraploid) 2	0.521
	CNS0095612	Silvery flower (tetraploid) 3	0.351
	CNS0095613	Golden flower (tetraploid) 1	0.211
	CNS0095614	Golden flower (tetraploid) 2	0.137
	CNS0095615	Golden flower (tetraploid) 3	0.399
CRA001975	CRR073297	Stem 1	7.969
	CRR073298	Stem 2	8.080
	CRR073299	Stem 3	17.503
	CRR073300	Leaf 1	0.910
	CRR073301	Leaf 2	0.871
	CRR073302	Leaf 3	1.213
	CRR073303	Juvenile bud 1	0.556
	CRR073304	Juvenile bud 2	0.714
	CRR073305	Juvenile bud 3	0.321
	CRR073306	Third green 1	0.088
	CRR073307	Third green 2	0.639
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.079
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.058
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.106
	CRR073315	Gold flowering 1	0.784
	CRR073316	Gold flowering 2	0.222
	CRR073317	Gold flowering 3	0.145
	CRR073318	Tawny withering 1	0.636
	CRR073319	Tawny withering 2	0.368
	CRR073320	Tawny withering 3	0.050