Gene detail

Detail information of GWHGAAZE022685

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004236950.1	PREDICTED: phosphoenolpyruvate carboxylase 4 [Solanum lycopersicum]
COG	YP_008045770.1	phosphoenolpyruvate carboxylase
Swissprot	tr\|Q8GVE8\|CAPP4_ARATH	Phosphoenolpyruvate carboxylase 4
trEMBL	tr\|K4BNK4\|K4BNK4_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g006970.2.1}
TAIR10	AT1G68750.1	phosphoenolpyruvate carboxylase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76840143	76851716	+
GWHAAZE00000006	mRNA	76840143	76851716	+
GWHAAZE00000006	exon	76840143	76840298	+
GWHAAZE00000006	exon	76840990	76841153	+
GWHAAZE00000006	exon	76841749	76841863	+
GWHAAZE00000006	exon	76841992	76842069	+
GWHAAZE00000006	exon	76842177	76842245	+
GWHAAZE00000006	exon	76842318	76842396	+
GWHAAZE00000006	exon	76842471	76842547	+
GWHAAZE00000006	exon	76842644	76842739	+
GWHAAZE00000006	exon	76843243	76843384	+
GWHAAZE00000006	exon	76844461	76844702	+
GWHAAZE00000006	exon	76845548	76845649	+
GWHAAZE00000006	exon	76845859	76846101	+
GWHAAZE00000006	exon	76846799	76846924	+
GWHAAZE00000006	exon	76847477	76847578	+
GWHAAZE00000006	exon	76847648	76847794	+
GWHAAZE00000006	exon	76849288	76849386	+
GWHAAZE00000006	exon	76849561	76849649	+
GWHAAZE00000006	exon	76850323	76850449	+
GWHAAZE00000006	exon	76850562	76850768	+
GWHAAZE00000006	exon	76850892	76851716	+
GWHAAZE00000006	CDS	76840143	76840298	+
GWHAAZE00000006	CDS	76840990	76841153	+
GWHAAZE00000006	CDS	76841749	76841863	+
GWHAAZE00000006	CDS	76841992	76842069	+
GWHAAZE00000006	CDS	76842177	76842245	+
GWHAAZE00000006	CDS	76842318	76842396	+
GWHAAZE00000006	CDS	76842471	76842547	+
GWHAAZE00000006	CDS	76842644	76842739	+
GWHAAZE00000006	CDS	76843243	76843384	+
GWHAAZE00000006	CDS	76844461	76844702	+
GWHAAZE00000006	CDS	76845548	76845649	+
GWHAAZE00000006	CDS	76845859	76846101	+
GWHAAZE00000006	CDS	76846799	76846924	+
GWHAAZE00000006	CDS	76847477	76847578	+
GWHAAZE00000006	CDS	76847648	76847794	+
GWHAAZE00000006	CDS	76849288	76849386	+
GWHAAZE00000006	CDS	76849561	76849649	+
GWHAAZE00000006	CDS	76850323	76850449	+
GWHAAZE00000006	CDS	76850562	76850768	+
GWHAAZE00000006	CDS	76850892	76851716	+

Transcript Sequence
>GWHTAAZE022715 ATGACAGACATCACCGACGATATAGCAGAGGAAATATCGTTCCAAAGCTTCGAGGATGACTGTAGGCTACTCGGAAGCCTCCTCAACGATGTTCTACAGCGAGAAGCTGGTAGCAAATTCGTCGAAAAAGTCGAGAGAACTCGTGTCCTCGCTCAGAGTGCATGCACCATGAGATTAGCTGGGATTGAGGACACAGCAGAGCTTCTCGAGAGGCAACTAGCATCAGAGTTATCGGAAATGACTTTAGAAGAAGCCCTGACGCTGGCCAGAGCTTTCAGTCATTATCTTAGTTTGATGGGGATAGCTGAAACTCATCACAGGGTTCGCAAGGCACGAAATGTGGCACAATTATCAAAATCTTGTGATGATACTTTCAATCAGTTGGTGCAGGCTGGAGTATCCCCGGAGGATCTTTATGATGCTGTTTGCAAGCAGGAAGTCGAGATTGTTCTCACTGCGCATCCCACTCAAATCAATCGACGTACTTTACAGTACAAACACATAAGAATTGCACATCTTTTAGAGTATAATGATCGACCTGATCTTGGGCATGAAGACCGAGAAATGCTGATAGAAGATCTGGTTAGAGAGATCACCTCGATATGGCAGACAGATGAACTTAGGCGCCACAAGCCCACACCCGTAGATGAAGCTAGGGCTGGTTTGCACATTGTCGAGCAATCCCTCTGGAGAGCTGTGCCTCATTATTTACGCCGTGTCAGCAATGCTCTAAAGAAGCATACTGGAAAACCACTTCCATTAACATGCACGCCAATTAAATTTGGATCCTGGATGGGAGGTGATAGAGATGGGAATCCAAATGTAACAGCAAAGGTCACAAAAGATGTCTCTCTTTTATCTAGGTGGATGGCTATTGATCTCTTCGAAAGGGAAATTGATTACCTCAAGTTTGAACTTTCCATGAACCAGTGTAATGCCAAATTGTCAAGGCTGGCAAATGAAATTTTAGAGAAGGACTCCCAAAGCTCCAACTGTAACATTACTAAGCTGCTTCTATTATTTGATGGTAGCTCAAATTTCTGTCCAGAAACTTTTTCAGAGAATCAGAATGACAGTTGGACCCAAACACAATACTGGGGTCAAGCGAAACATCCGAACCAACAAGCCTCAGCCCTACCTAAGCAACTTCCAGCAGGAGCTGATATACCCTCTTGTACAGGTGAAGCTCTTTGTCCTGACAGTTTTCTGATTATGTGTGATGTGGAATCGCAATACCCTCGACTAGATCTTCCTGGAACAGAATACAAACAGTTGAAAGTGGAAGTTCCTGGAAAAGAATATAAACCATTGCCCCGTCAGGATTCAGGTGGAAATATTCACAAAACATTTGGAAATGGAAATTTAACTAATTCTGGCCATGCTCAGCAACCTACAACACCACGTTCTCCTTCTATGAACTCCAGTCAACTCCTTGCCCAGCGGAAACTGTTTGCTGAATCTCAGACAGGAAGGACCAGCTTCCGTAAGCTTCTGGAACCAAACCTGTCCCAGCGACCTCAAATTGCTCCTTACAGAGCTGTTCTTGGAAACGTAAAAGATAAGCTTATGAAGACACGGAAGCGACTGGAGCTTCTTCTTGAGAATCTTCCTTGCGAGCAAGATCCTTCTGATTATTATGAAACAGCGGAGCAGTTTCTCGAACCATTACTTCTCTGTTATGATTCTTTGCAATCATGTGGATCAGGGGTTCTAGCTGATGGTCGGCTTACGGACTTAATCAGAAGAGTTTCTACCTTTGGGATGGTTTTAATGAAGCTTGACTTGCGTCAGGAATCTGCTAGACATTCGGAGGCTCTTGATGCAATAACCAAATATCTTGATATGGGTACGTATAGCGAGTGGGATGAAGAAAAAAGGCTTGAATTTCTAACTAGAGAACTGAAAGGGAAGAGGCCTCTAGTTCCTCCAACTATAGAGGTTGCTCCTGATGTTAGAGAAGTCCTGGACACCTTCCGTGTCGCTGCTGAGCTGGGAAGTGATTCACTAGGGGCATACGTGATTTCTATGGCCTCAAATGCAAGTGACGTTCTTGCTGTAGAGCTTTTGCAGAAGGATGCCCGTCTTGCCGTTGCTGGGGAGCTTGGCAGACCGTGTCCAGGTGGAACGCTGCGTGTGGTTCCTCTATTTGAGACGGTGAAGGACTTGAGAGGAGCTGGCTCAGTAATTAGGAAATTATTATCAATTGATTGGTATCGGAAGCATGTCATAAATAACCATAATGGGCAGCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGGCGATTTACCGCTGCTTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAAAGAGTATGGCATAAACATTACTCTTTTCCATGGCCGTGGAGGGAGTATTGGTCGTGGTGGTGGTCCCACATATCTTGCTATTCAGTCCCAACCTCCAGGTTCTGTAACGGGCTCACTTCGATCGACCGAACAGGGAGAAATGGTGCAGGCCAAGTTTGGGCTACCACAGACAGCAGTTCGACAACTTGAAATCTACACAACAGCTGTGCTACTTGCTACCCTACGCCCTCCACTACCACCCAGAGAAGAAAAATGGCGCAATCTCATGGAAGAAATCTCGAAAATAAGTTGTCAAAGTTACCGGAGCACAGTCTACGAGAACCCCGACTTCATTATGTACTTCCAAGAAGCTACACCACAGGCCGAGCTAGGGTTCCTCAATATAGGAAGCCGTCCCACAAGAAGAAAGACCTCAGGAGGTATTGGTCACCTGCGTGCCATTCCATGGATATTCGCGTGGACCCAAACCAGATTTGTCCTTCCAGCTTGGCTTGGAGTTGGGGCAGGCTTGAAGGGTGTCTGTGAAAAAGGACATACTGAAGAACTATGCGTAATTTACAAAGAGTGGCCATTCTTTCAGTCGACCTTGGACCTTATAGAGATGGTTTTGGGGAAAGCGGATATTCCGATAGTGAAGCATTACGACGAAGTTCTAGTGTCAGAGAGCAGGAGAGTACTGGGTGCTGAGCTGAGGAAGGAGCTTCTAGAAACGGAGAAGCATGTATTGGTGGTGACTGGGCATGAGAAGCTGTCTGATAACAACAGGAGCTTGCGAAGGCTGATTGAGAGTAGGCTTCCATATCTAAACCCCTTGAATATGTTGCAGGTGGAGATATTGAGGAGGCTGAGATGCGATGATGATAATCATAAACTTAGAGATGCATTGCTTATTACTATCAATGGGATTGCTGCTGGGATGAGGAACACGGGTTAA

Network for GWHGAAZE022685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	145	330	4.70E-57
PF00311.18	PEPcase	474	1094	4.70E-227

Protein Sequence

>GWHPAAZE022701
MTDITDDIAEEISFQSFEDDCRLLGSLLNDVLQREAGSKFVEKVERTRVLAQSACTMRLAGIEDTAELLERQLASELSEMTLEEALTLARAFSHYLSLMGIAETHHRVRKARNVAQLSKSCDDTFNQLVQAGVSPEDLYDAVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLEYNDRPDLGHEDREMLIEDLVREITSIWQTDELRRHKPTPVDEARAGLHIVEQSLWRAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLFEREIDYLKFELSMNQCNAKLSRLANEILEKDSQSSNCNITKLLLLFDGSSNFCPETFSENQNDSWTQTQYWGQAKHPNQQASALPKQLPAGADIPSCTGEALCPDSFLIMCDVESQYPRLDLPGTEYKQLKVEVPGKEYKPLPRQDSGGNIHKTFGNGNLTNSGHAQQPTTPRSPSMNSSQLLAQRKLFAESQTGRTSFRKLLEPNLSQRPQIAPYRAVLGNVKDKLMKTRKRLELLLENLPCEQDPSDYYETAEQFLEPLLLCYDSLQSCGSGVLADGRLTDLIRRVSTFGMVLMKLDLRQESARHSEALDAITKYLDMGTYSEWDEEKRLEFLTRELKGKRPLVPPTIEVAPDVREVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVAGELGRPCPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRKHVINNHNGQQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEYGINITLFHGRGGSIGRGGGPTYLAIQSQPPGSVTGSLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPLPPREEKWRNLMEEISKISCQSYRSTVYENPDFIMYFQEATPQAELGFLNIGSRPTRRKTSGGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLKGVCEKGHTEELCVIYKEWPFFQSTLDLIEMVLGKADIPIVKHYDEVLVSESRRVLGAELRKELLETEKHVLVVTGHEKLSDNNRSLRRLIESRLPYLNPLNMLQVEILRRLRCDDDNHKLRDALLITINGIAAGMRNTG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.204
	SRR3591706	second leaf	0.246
	SRR3591707	mature leaf	0.585
	SRR3591708	Shoot apex	0.068
	SRR3591709	Stem	0.324
	SRR3591710	White floral bud	3.056
	SRR3591711	White flower	0.487
	SRR3591712	Green floral bud	43.136
	SRR3591713	Yellow flower	0.069
SRP173429	SRR8316895	Juvenile bud stage	16.320
	SRR8316896	Juvenile bud stage	35.956
	SRR8316897	Juvenile bud stage	16.354
	SRR8316894	Third green stage	12.625
	SRR8316900	Third green stage	39.998
	SRR8316901	Third green stage	42.013
	SRR8316898	Complete white stage	0.194
	SRR8316899	Complete white stage	0.967
	SRR8316903	Complete white stage	0.184
	SRR8316902	Silver flowering stage	0.411
	SRR8316904	Silver flowering stage	0.350
	SRR8316905	Silver flowering stage	0.137
	SRR8316906	Gold flowering stage	0.249
	SRR8316907	Gold flowering stage	0.386
	SRR8316908	Gold flowering stage	0.074
SRP132670	SRR6706286	Control	19.564
	SRR6706287	Light intensity 50%	17.609
	SRR6706288	Light intensity 20%	16.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.428
	CNS0095593	Slightly white alabastrum(diploid) 2	15.467
	CNS0095594	Slightly white alabastrum(diploid) 3	25.620
	CNS0095595	Whole white alabastrum(diploid) 2	26.971
	CNS0095596	Whole white alabastrum(diploid) 3	33.528
	CNS0095597	Whole white alabastrum(diploid) 4	26.029
	CNS0095598	Silvery flower (diploied) 1	1.170
	CNS0095599	Silvery flower (diploied) 2	0.875
	CNS0095600	Silvery flower (diploied) 3	0.671
	CNS0095601	Golden flower (diploid) 1	0.973
	CNS0095602	Golden flower (diploid) 2	0.614
	CNS0095603	Golden flower (diploid) 3	0.750
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.633
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.154
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.273
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.847
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.932
	CNS0095610	Silvery flower (tetraploid) 1	0.219
	CNS0095611	Silvery flower (tetraploid) 2	0.489
	CNS0095612	Silvery flower (tetraploid) 3	0.405
	CNS0095613	Golden flower (tetraploid) 1	0.081
	CNS0095614	Golden flower (tetraploid) 2	0.127
	CNS0095615	Golden flower (tetraploid) 3	0.244
CRA001975	CRR073297	Stem 1	19.074
	CRR073298	Stem 2	16.659
	CRR073299	Stem 3	11.014
	CRR073300	Leaf 1	23.073
	CRR073301	Leaf 2	27.232
	CRR073302	Leaf 3	16.650
	CRR073303	Juvenile bud 1	13.535
	CRR073304	Juvenile bud 2	8.313
	CRR073305	Juvenile bud 3	1.421
	CRR073306	Third green 1	0.519
	CRR073307	Third green 2	0.998
	CRR073308	Third green 3	0.796
	CRR073309	Second white 1	0.252
	CRR073310	Second white 2	0.360
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.275
	CRR073313	Silver flowering 2	0.103
	CRR073314	Silver flowering 3	0.135
	CRR073315	Gold flowering 1	4.329
	CRR073316	Gold flowering 2	5.033
	CRR073317	Gold flowering 3	5.915
	CRR073318	Tawny withering 1	1.107
	CRR073319	Tawny withering 2	1.870
	CRR073320	Tawny withering 3	1.266