Gene detail

Detail information of GWHGAAZE022694

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045669.1	0	S-adenosylmethionine decarboxylase proenzyme [Theobroma cacao]
Swissprot	tr\|O80402\|DCAM_NICSY	0	S-adenosylmethionine decarboxylase beta chain (Precursor)
trEMBL	tr\|A0A061E963\|A0A061E963_THECC	0	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256\|PIRNR:PIRNR001355}
TAIR10	AT3G25570.2	4E-139	Adenosylmethionine decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77032253	77033329	+
GWHAAZE00000006	mRNA	77032253	77033329	+
GWHAAZE00000006	exon	77032253	77033329	+
GWHAAZE00000006	CDS	77032253	77033329	+

Transcript Sequence
>GWHTAAZE022724 ATGGCTTTGGCTGTTTCCGCAATCGGTTTTGAAGGTTATGAAAAGAGGCTCGAAGTTTCATTTTTTGAGCCAAGCATCTTTGCTGATCCCGAAGGGAAGGGCCTGCGAACCCTTTCAAAATCTCAGTTGGATGAGATTCTTCAACCTGCAGAGTGCACTATAGTCTCTTCGTTATCAAATGACGAAGTCGACTCTTATGTCCTTTCAGAGTCTAGCCTTTTTGTTTACCCTTACAAGATTATCATCAAAACATGTGGTACAACGAAGTTGCTCATGTCGATTCCTGCCATTCTTAAGATGGCTGGTTCCATTCCCCTCGCAGTCCGATCTGTGAGGTACACGCGTGGGAGTTTCATCTTCCCTGGAGCTCAGTCCTATCCTCATCGCAGCTTCTCAGAGGAAGTAGCTGTACTCGATGGGTATTTTGGTCATTTCAACTCAGGCAGCAAGGCCTACATAATGGGCGGCTGTGACAAACTGCAAAAGTGGCATGTATACTCTGCCTCTGCTGGATCTTTGCAGTCTTTTGACCCCGTTTACACACTCGAGATGTGTATGGTTGGTTTGGACAGGGAAAAGGCTTCCGTATTTTACAAAAGCCAATCAAGCTCAGCAACCTTGATGACTGATGTGTCCGGAATAAGGAAGATTCTTCCCAATTCTGAAATATGTGATTTTGAGTTTGACCCATGTGGTTATTCTATGAATGCGATTGAAGGAGCCGCAATTTCGACCATTCATGTTACACCTGAAGATGGCTTTAGCTATGCAAGCTTCGAATCTGTTGGGTATGACCCGAAAGTTGTGAACCTGGAGCAACTGGTCAGGAGGGTGCTGCATTGTTTTGAACCAACTGAGTTCTCTGTAGCCATGCACGCTGATGTTGCTGGTCAATTGCTCGAGAAAACATGCTCATTGGATGTTAAGGGTTACGGTCTGGGAGAGGTGAGCCGAGAAGATCTTGGAATTGGAGGTTCAATTGTTTACCAGAAGTTTGTGAAGACTATGGGGTGTGGATCTCCAAGATCTGTTCTGAAATGCTGCTGGAAAGACGAGGAGAATGAAGAAAAGGAGTAG

Network for GWHGAAZE022694

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01536.17	SAM_decarbox	9	332	4.20E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01611	speD, AMD1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006597	biological_process	spermine biosynthetic process
GO:0008295	biological_process	spermidine biosynthetic process
GO:0004014	molecular_function	adenosylmethionine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	502.208
	SRR3591706	second leaf	417.079
	SRR3591707	mature leaf	407.458
	SRR3591708	Shoot apex	578.357
	SRR3591709	Stem	556.319
	SRR3591710	White floral bud	449.305
	SRR3591711	White flower	733.701
	SRR3591712	Green floral bud	455.505
	SRR3591713	Yellow flower	790.716
SRP173429	SRR8316895	Juvenile bud stage	337.023
	SRR8316896	Juvenile bud stage	460.540
	SRR8316897	Juvenile bud stage	226.355
	SRR8316894	Third green stage	184.897
	SRR8316900	Third green stage	525.397
	SRR8316901	Third green stage	581.841
	SRR8316898	Complete white stage	263.805
	SRR8316899	Complete white stage	496.900
	SRR8316903	Complete white stage	385.456
	SRR8316902	Silver flowering stage	178.158
	SRR8316904	Silver flowering stage	245.151
	SRR8316905	Silver flowering stage	120.689
	SRR8316906	Gold flowering stage	433.857
	SRR8316907	Gold flowering stage	392.051
	SRR8316908	Gold flowering stage	400.362
SRP132670	SRR6706286	Control	517.827
	SRR6706287	Light intensity 50%	522.480
	SRR6706288	Light intensity 20%	553.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	381.690
	CNS0095593	Slightly white alabastrum(diploid) 2	420.104
	CNS0095594	Slightly white alabastrum(diploid) 3	407.642
	CNS0095595	Whole white alabastrum(diploid) 2	431.572
	CNS0095596	Whole white alabastrum(diploid) 3	449.489
	CNS0095597	Whole white alabastrum(diploid) 4	430.310
	CNS0095598	Silvery flower (diploied) 1	283.913
	CNS0095599	Silvery flower (diploied) 2	386.220
	CNS0095600	Silvery flower (diploied) 3	439.491
	CNS0095601	Golden flower (diploid) 1	331.790
	CNS0095602	Golden flower (diploid) 2	401.805
	CNS0095603	Golden flower (diploid) 3	384.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	327.424
	CNS0095605	Slightly white alabastrum(tetraploid) 2	341.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	274.650
	CNS0095607	Whole white alabastrum(tetraploid) 1	298.227
	CNS0095608	Whole white alabastrum(tetraploid) 2	252.753
	CNS0095609	Whole white alabastrum(tetraploid) 3	278.252
	CNS0095610	Silvery flower (tetraploid) 1	232.451
	CNS0095611	Silvery flower (tetraploid) 2	163.638
	CNS0095612	Silvery flower (tetraploid) 3	131.706
	CNS0095613	Golden flower (tetraploid) 1	169.627
	CNS0095614	Golden flower (tetraploid) 2	206.895
	CNS0095615	Golden flower (tetraploid) 3	274.613
CRA001975	CRR073297	Stem 1	299.360
	CRR073298	Stem 2	272.241
	CRR073299	Stem 3	260.973
	CRR073300	Leaf 1	420.537
	CRR073301	Leaf 2	430.140
	CRR073302	Leaf 3	387.028
	CRR073303	Juvenile bud 1	465.312
	CRR073304	Juvenile bud 2	488.161
	CRR073305	Juvenile bud 3	351.461
	CRR073306	Third green 1	1089.889
	CRR073307	Third green 2	821.827
	CRR073308	Third green 3	925.211
	CRR073309	Second white 1	400.440
	CRR073310	Second white 2	582.584
	CRR073311	Second white 3	528.969
	CRR073312	Silver flowering 1	493.327
	CRR073313	Silver flowering 2	367.371
	CRR073314	Silver flowering 3	468.237
	CRR073315	Gold flowering 1	270.350
	CRR073316	Gold flowering 2	378.029
	CRR073317	Gold flowering 3	266.582
	CRR073318	Tawny withering 1	550.474
	CRR073319	Tawny withering 2	599.130
	CRR073320	Tawny withering 3	542.886