Detail information of GWHGAAZE022702


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010257854.10PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Nelumbo nucifera]
COGYP_007099331.106-phosphogluconate dehydrogenase, decarboxylating
Swissprottr|Q9FWA3|6GPD3_ARATH06-phosphogluconate dehydrogenase, decarboxylating 3
trEMBLtr|A0A067G3F9|A0A067G3F9_CITSI06-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}
TAIR10AT3G02360.206-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7715793877159353-
GWHAAZE00000006mRNA7715793877159353-
GWHAAZE00000006exon7715793877159353-
GWHAAZE00000006CDS7715793877159353-
Transcript Sequence

Network for GWHGAAZE022702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03446.16NAD_binding_211544.50E-41
PF00393.206PGD1694623.60E-126
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00033PGD, gnd, gntZ Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Pentose phosphate pathwaymap00030
Glutathione metabolismmap00480

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006098biological_processpentose-phosphate shunt
GO:0050661molecular_functionNADP binding
GO:0016491molecular_functionoxidoreductase activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.167
SRR3591706second leaf68.973
SRR3591707mature leaf44.936
SRR3591708Shoot apex69.926
SRR3591709Stem73.108
SRR3591710White floral bud47.959
SRR3591711White flower66.498
SRR3591712Green floral bud59.130
SRR3591713Yellow flower60.951
SRP173429 SRR8316895Juvenile bud stage 58.980
SRR8316896Juvenile bud stage 72.160
SRR8316897Juvenile bud stage 36.475
SRR8316894Third green stage 38.537
SRR8316900Third green stage 120.650
SRR8316901Third green stage 104.107
SRR8316898Complete white stage 45.574
SRR8316899Complete white stage 140.004
SRR8316903Complete white stage 64.151
SRR8316902Silver flowering stage56.240
SRR8316904Silver flowering stage76.426
SRR8316905Silver flowering stage42.259
SRR8316906Gold flowering stage 188.648
SRR8316907Gold flowering stage 147.466
SRR8316908Gold flowering stage 178.698
SRP132670SRR6706286Control137.044
SRR6706287Light intensity 50%144.756
SRR6706288Light intensity 20%151.769
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.735
CNS0095593Slightly white alabastrum(diploid) 262.080
CNS0095594Slightly white alabastrum(diploid) 351.956
CNS0095595Whole white alabastrum(diploid) 257.279
CNS0095596Whole white alabastrum(diploid) 341.429
CNS0095597Whole white alabastrum(diploid) 447.397
CNS0095598Silvery flower (diploied) 149.310
CNS0095599Silvery flower (diploied) 247.154
CNS0095600Silvery flower (diploied) 394.677
CNS0095601Golden flower (diploid) 138.784
CNS0095602Golden flower (diploid) 280.880
CNS0095603Golden flower (diploid) 384.936
CNS0095604Slightly white alabastrum(tetraploid) 173.431
CNS0095605Slightly white alabastrum(tetraploid) 259.140
CNS0095606Slightly white alabastrum(tetraploid) 3169.836
CNS0095607Whole white alabastrum(tetraploid) 140.051
CNS0095608Whole white alabastrum(tetraploid) 232.630
CNS0095609Whole white alabastrum(tetraploid) 396.510
CNS0095610Silvery flower (tetraploid) 198.771
CNS0095611Silvery flower (tetraploid) 292.732
CNS0095612Silvery flower (tetraploid) 358.733
CNS0095613Golden flower (tetraploid) 156.169
CNS0095614Golden flower (tetraploid) 292.119
CNS0095615Golden flower (tetraploid) 345.008
CRA001975CRR073297Stem 183.648
CRR073298Stem 284.521
CRR073299Stem 371.298
CRR073300Leaf 1105.341
CRR073301Leaf 2103.136
CRR073302Leaf 3114.257
CRR073303Juvenile bud 194.882
CRR073304Juvenile bud 293.637
CRR073305Juvenile bud 3118.546
CRR073306Third green 146.403
CRR073307Third green 233.331
CRR073308Third green 333.255
CRR073309Second white 180.463
CRR073310Second white 258.049
CRR073311Second white 356.952
CRR073312Silver flowering 155.251
CRR073313Silver flowering 255.597
CRR073314Silver flowering 347.381
CRR073315Gold flowering 132.931
CRR073316Gold flowering 235.990
CRR073317Gold flowering 339.188
CRR073318Tawny withering 163.612
CRR073319Tawny withering 254.452
CRR073320Tawny withering 357.314