Gene detail

Detail information of GWHGAAZE022706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002314910.2	4.7926E-132	basic helix-loop-helix family protein [Populus trichocarpa]
Swissprot	tr\|Q9CAA9\|BH049_ARATH	2E-71	Transcription factor bHLH49
trEMBL	tr\|B9HWS9\|B9HWS9_POPTR	2E-132	Basic helix-loop-helix family protein {ECO:0000313\|EMBL:EEF01081.2}
TAIR10	AT1G68920.3	6E-60	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77278100	77279978	+
GWHAAZE00000006	mRNA	77278100	77279978	+
GWHAAZE00000006	exon	77278100	77278615	+
GWHAAZE00000006	exon	77278720	77278932	+
GWHAAZE00000006	exon	77279029	77279259	+
GWHAAZE00000006	exon	77279377	77279442	+
GWHAAZE00000006	exon	77279513	77279581	+
GWHAAZE00000006	exon	77279868	77279978	+
GWHAAZE00000006	CDS	77278100	77278615	+
GWHAAZE00000006	CDS	77278720	77278932	+
GWHAAZE00000006	CDS	77279029	77279259	+
GWHAAZE00000006	CDS	77279377	77279442	+
GWHAAZE00000006	CDS	77279513	77279581	+
GWHAAZE00000006	CDS	77279868	77279978	+

Transcript Sequence
>GWHTAAZE022736 ATGGCTGACCAGGATAAATTTGAACTAGAAAAAGGAAATGAGGAGCCTATAATAGACTACAATTCGCCCAATTTGTCCTCAGAATGGCGATTTAACGGTGCCAATCTTCCAAACACGACGATGGGATTGATTCCCCCCATGGCAATATGTAAAGGAGATATACTTGAATCTTCTTCTTGTTCCTCTGCCTCCATGTTGGACTCCTCCTTTTGTCCACCCATCTGGGACCAGCCCACCAATTCACATAGCTTGGGCTTCTGTGACATTAGTGTTCAAAACAATGTTAGAACCTCAAACACACTTGGATTTAGGAAAGGCAATTTGGTCCCTCCAAGAAGTGTTGAGAGGACGCTTGATATGAGTTGGGCTCCACAAAATTCAATACCCAAAGAGGCCTTGTTCTTGCCAACTATTACTACTCCTGGGATCCTTCCTCAGAGCTTATCTCATTGCCCCACAGATTCGGGTTTATTGAGCGAGCTGCGAGGTTCTCTTGCTTTAGTGGAGGAAATTTTGTCTCAGAAAAATGAAATAATGACCGAAGGATCCAAAGAGTGCGGGGCTACTGAAGGGAGCCCACTTAAAAGTGAAGCAAAACTAGGTGTTGGTGTGTCTGATGAAGCTGACTTTAGTGGTGGCGGTGGTCGAGAGGGGCAATCGCCGGTGGAAGGTACCAGTGGGGAAAATTCTACCAAGGGACGCTCAAGGAAAAGGAAAGGAAGCGGGCAGGATAATGAGCATGATCAACCCAAGGGAGCTCCACAAACACATCATGAAGCAAAAACGGATAACACCGAAATTCAAAAGAAGGGAGATCAACACATAACTATTACCGCAAAGAGGCCTCCTGGGAAAAATGTTAAGGAAGTAACACAAGCCTCTGATGCAGTTAAGGAAGAGTACATACACGTTAGAGCTCGAAGAGGCCAGGCAACTAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGGGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAGGACCTTGTGCCCGGTTGCAACAAGGTCACAGGCAAGGCAGTAATGCTCGATGAAATTATCAACTATGTACAATCACTACAACGACAGGTTGAGTTTCTGTCAATGAAACTCGCAACAGTTAATCCTCGGATGGAGTTTAACATCGAAGGGATCCTCACTAAAGATGTAAGAGAACACAAACACACAAAAAAACATACTTTCTAA

Network for GWHGAAZE022706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	313	361	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.291
	SRR3591706	second leaf	12.308
	SRR3591707	mature leaf	8.171
	SRR3591708	Shoot apex	21.355
	SRR3591709	Stem	13.264
	SRR3591710	White floral bud	181.078
	SRR3591711	White flower	154.998
	SRR3591712	Green floral bud	69.923
	SRR3591713	Yellow flower	68.597
SRP173429	SRR8316895	Juvenile bud stage	47.586
	SRR8316896	Juvenile bud stage	64.100
	SRR8316897	Juvenile bud stage	28.373
	SRR8316894	Third green stage	36.883
	SRR8316900	Third green stage	110.312
	SRR8316901	Third green stage	116.557
	SRR8316898	Complete white stage	117.009
	SRR8316899	Complete white stage	204.559
	SRR8316903	Complete white stage	193.637
	SRR8316902	Silver flowering stage	50.912
	SRR8316904	Silver flowering stage	102.315
	SRR8316905	Silver flowering stage	42.944
	SRR8316906	Gold flowering stage	85.937
	SRR8316907	Gold flowering stage	66.593
	SRR8316908	Gold flowering stage	72.952
SRP132670	SRR6706286	Control	116.870
	SRR6706287	Light intensity 50%	138.032
	SRR6706288	Light intensity 20%	140.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.046
	CNS0095593	Slightly white alabastrum(diploid) 2	35.781
	CNS0095594	Slightly white alabastrum(diploid) 3	29.910
	CNS0095595	Whole white alabastrum(diploid) 2	31.752
	CNS0095596	Whole white alabastrum(diploid) 3	36.702
	CNS0095597	Whole white alabastrum(diploid) 4	32.732
	CNS0095598	Silvery flower (diploied) 1	37.531
	CNS0095599	Silvery flower (diploied) 2	27.892
	CNS0095600	Silvery flower (diploied) 3	112.600
	CNS0095601	Golden flower (diploid) 1	12.126
	CNS0095602	Golden flower (diploid) 2	26.031
	CNS0095603	Golden flower (diploid) 3	27.686
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.175
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.981
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.130
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.742
	CNS0095610	Silvery flower (tetraploid) 1	107.104
	CNS0095611	Silvery flower (tetraploid) 2	72.320
	CNS0095612	Silvery flower (tetraploid) 3	230.039
	CNS0095613	Golden flower (tetraploid) 1	23.989
	CNS0095614	Golden flower (tetraploid) 2	39.270
	CNS0095615	Golden flower (tetraploid) 3	11.907
CRA001975	CRR073297	Stem 1	93.648
	CRR073298	Stem 2	95.098
	CRR073299	Stem 3	77.865
	CRR073300	Leaf 1	135.486
	CRR073301	Leaf 2	129.317
	CRR073302	Leaf 3	77.324
	CRR073303	Juvenile bud 1	82.639
	CRR073304	Juvenile bud 2	97.925
	CRR073305	Juvenile bud 3	113.843
	CRR073306	Third green 1	68.263
	CRR073307	Third green 2	82.488
	CRR073308	Third green 3	97.181
	CRR073309	Second white 1	71.024
	CRR073310	Second white 2	81.228
	CRR073311	Second white 3	88.972
	CRR073312	Silver flowering 1	39.910
	CRR073313	Silver flowering 2	31.635
	CRR073314	Silver flowering 3	33.018
	CRR073315	Gold flowering 1	5.185
	CRR073316	Gold flowering 2	5.981
	CRR073317	Gold flowering 3	5.392
	CRR073318	Tawny withering 1	6.203
	CRR073319	Tawny withering 2	7.158
	CRR073320	Tawny withering 3	5.300