Gene detail

Detail information of GWHGAAZE022727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650027.1	2.03861E-76	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q94JW8\|SPL6_ARATH	3E-49	Squamosa promoter-binding-like protein 6
trEMBL	tr\|F6HEZ9\|F6HEZ9_VITVI	6E-72	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51091.1}
TAIR10	AT1G69170.1	6E-41	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77694466	77695545	+
GWHAAZE00000006	mRNA	77694466	77695545	+
GWHAAZE00000006	exon	77694466	77695136	+
GWHAAZE00000006	exon	77695332	77695545	+
GWHAAZE00000006	CDS	77694466	77695136	+
GWHAAZE00000006	CDS	77695332	77695545	+

Transcript Sequence
>GWHTAAZE022757 ATGGAGTACTGGGGAAATGCTTTGGAAGGAAGGGGACTTCTGTTTTATGATGACATAGAATTGCAGGTTGATAATGATCATCATGATGGTATTTCAAACCCTAGAAATTCTTTAAATCAATGGGACATGAAAACCCTTTCTGATTTTGATAAAAACTTGATAGACCCTAACGCCAAAACTATCGATAACATGGAGGTTAGGGAATCCGATTTCCATCAAATTATCAGTAATTCACTTTCTAGTGACCCAAGTTCGGGGTGTTTGGCTACAGAAATTAGTGATGATTCAAGTAAAGCAGTATCTTCTGTCCTTGGGGTATTGGAATTTGGGTCAAGGGTTTCTAGTTCTGTCACGAAATCTAGTAATCAAAAATCATCATCTCCGGTTGATTTGAGGTTGAGGAGATTGGCTGATTCTGTGGAAATTAACAATTGTAAATTTTCGAAAGGAAGTTCGGTTTTGTCTTCCGTGGGATTTTCCTCTACAGCAAAGAGAGCCCGCAAAGAAAATTTCTGTTCTCAGGTTTATGTCTGCCAAGTTTATGGTTGTAATAAGGATCTAAGCTCCTCAAAGGAGTACTACAAAAGGCATAAAGTTTGTGATGTTCACTCAAAGGCTTCTAAAGTTTTTGTTAAGGGCATTGAGCAGAGGTTCTGTCAACAATGCAGCAGATTTCATTTGCTGGCTGAATTTGACGATGGTAAACGTAGTTGTCGCAAACGCCTTGCTGGCCACAATGAACGTCGAAGAAAGCCACATATGGTTACTTGGTATGGTAAATCACACAGATTACTTAACCACTCTCAAGGTACCAACTTCTCTTGCTCTGATTTTGAAATTTCTTTCTTTCTCCCGTCCCTTTACATCTTCACTTCTTCAGAATAA

Network for GWHGAAZE022727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	178	251	8.70E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.085
	SRR3591706	second leaf	22.706
	SRR3591707	mature leaf	13.506
	SRR3591708	Shoot apex	20.907
	SRR3591709	Stem	13.979
	SRR3591710	White floral bud	8.486
	SRR3591711	White flower	10.302
	SRR3591712	Green floral bud	9.109
	SRR3591713	Yellow flower	2.453
SRP173429	SRR8316895	Juvenile bud stage	13.593
	SRR8316896	Juvenile bud stage	11.599
	SRR8316897	Juvenile bud stage	11.426
	SRR8316894	Third green stage	6.467
	SRR8316900	Third green stage	13.520
	SRR8316901	Third green stage	11.741
	SRR8316898	Complete white stage	3.715
	SRR8316899	Complete white stage	21.158
	SRR8316903	Complete white stage	6.855
	SRR8316902	Silver flowering stage	2.386
	SRR8316904	Silver flowering stage	5.093
	SRR8316905	Silver flowering stage	1.234
	SRR8316906	Gold flowering stage	1.108
	SRR8316907	Gold flowering stage	1.804
	SRR8316908	Gold flowering stage	3.492
SRP132670	SRR6706286	Control	6.904
	SRR6706287	Light intensity 50%	7.390
	SRR6706288	Light intensity 20%	8.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.495
	CNS0095593	Slightly white alabastrum(diploid) 2	7.544
	CNS0095594	Slightly white alabastrum(diploid) 3	4.853
	CNS0095595	Whole white alabastrum(diploid) 2	8.296
	CNS0095596	Whole white alabastrum(diploid) 3	4.181
	CNS0095597	Whole white alabastrum(diploid) 4	5.491
	CNS0095598	Silvery flower (diploied) 1	13.813
	CNS0095599	Silvery flower (diploied) 2	8.797
	CNS0095600	Silvery flower (diploied) 3	5.971
	CNS0095601	Golden flower (diploid) 1	8.090
	CNS0095602	Golden flower (diploid) 2	9.492
	CNS0095603	Golden flower (diploid) 3	8.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.850
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.789
	CNS0095610	Silvery flower (tetraploid) 1	4.786
	CNS0095611	Silvery flower (tetraploid) 2	7.429
	CNS0095612	Silvery flower (tetraploid) 3	4.082
	CNS0095613	Golden flower (tetraploid) 1	0.489
	CNS0095614	Golden flower (tetraploid) 2	4.288
	CNS0095615	Golden flower (tetraploid) 3	0.555
CRA001975	CRR073297	Stem 1	10.173
	CRR073298	Stem 2	11.525
	CRR073299	Stem 3	9.492
	CRR073300	Leaf 1	6.927
	CRR073301	Leaf 2	8.507
	CRR073302	Leaf 3	4.029
	CRR073303	Juvenile bud 1	5.346
	CRR073304	Juvenile bud 2	3.038
	CRR073305	Juvenile bud 3	6.255
	CRR073306	Third green 1	1.931
	CRR073307	Third green 2	1.650
	CRR073308	Third green 3	3.056
	CRR073309	Second white 1	0.548
	CRR073310	Second white 2	1.454
	CRR073311	Second white 3	0.325
	CRR073312	Silver flowering 1	0.144
	CRR073313	Silver flowering 2	0.037
	CRR073314	Silver flowering 3	0.455
	CRR073315	Gold flowering 1	4.445
	CRR073316	Gold flowering 2	5.405
	CRR073317	Gold flowering 3	3.475
	CRR073318	Tawny withering 1	4.201
	CRR073319	Tawny withering 2	2.070
	CRR073320	Tawny withering 3	5.550