Gene detail

Detail information of GWHGAAZE022759

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274549.1	8.02949E-95	PREDICTED: probable WRKY transcription factor 57 [Vitis vinifera]
Swissprot	tr\|Q9C983\|WRK57_ARATH	4E-59	Probable WRKY transcription factor 57
trEMBL	tr\|F6HF79\|F6HF79_VITVI	3E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51066.1}
TAIR10	AT1G69310.2	2E-44	WRKY DNA-binding protein 57

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78154245	78158225	-
GWHAAZE00000006	mRNA	78154245	78158225	-
GWHAAZE00000006	exon	78154245	78154608	-
GWHAAZE00000006	exon	78156597	78156749	-
GWHAAZE00000006	exon	78157861	78158225	-
GWHAAZE00000006	CDS	78157861	78158225	-
GWHAAZE00000006	CDS	78156597	78156749	-
GWHAAZE00000006	CDS	78154245	78154608	-

Transcript Sequence
>GWHTAAZE022789 ATGGATGATAACGGAGAACTCGATCCGTCAACAGAGTTCTCCCCCGAGTCTAGCTGGACACTTACGGACGACGTTTACTTCTTCGGAACCGATAGAGAGAGCAGTATACTGAGAGAGTTTGGATGGAATCTTCAGCCGGAGTTGCGTTTTGGAGATTTTGATCGGATCGTACCTGAATTAACCGAAGGTGTTAGGGTTTCGTCGCCGGAAAGAAGTACTGTAAGTAGCGCGGCTCAGGCCGGACCAGTGGAGAAAGTCGATGATCCATCGATGTTGAATCAGTCCGTATCTTCGAGCTCATCGGAGGATCCGGCTGAGAAGTCGACGGATTCCGGTGCTGGCGGGAAACTGCCGGCCGAATCAGCGAGCAAGGATGATAAAGATAAAAAGAAGGGGCCAAAGAGAATGAGGCAGCAACGCGTTGCATTCATGACTAAGAGTGAAGTCGACCATTTAGAAGATGGGTACCGGTGGAGGAAATATGGACAGAAAGCTGTTAAAAATAGTCCTTTCCCTAGGAGTTATTATCGGTGTACAAACAGCAAATGCACGGTGAAGAAAAGAGTAGAACGTTCTTATGAAGACCCAACAATTGTAATCACCACATATGAAGGCCACCACTCTCACCACACTGCTGGATTCACCCGAGGTCTTATTAGTAGTATCCCCAATTTTCACAATCCTTCACCCTCCCATTTTCACAATCCAGTAGCATACCCTTTTAATCCGCAACAATTACAATCTCTTAGTACCATACAACCGTGCCAAGTCTCTGTTGAAGCAAGAGATTCACATGCGCGAGTGCCTACTCCTATGCATCTGCTTCCCTCAGATGAAGGACTACTTGGGGATATGGTGCACCCAGGAATACGAGACAAATAA

Network for GWHGAAZE022759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	153	209	4.10E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.315
	SRR3591706	second leaf	4.494
	SRR3591707	mature leaf	11.202
	SRR3591708	Shoot apex	3.924
	SRR3591709	Stem	21.097
	SRR3591710	White floral bud	10.768
	SRR3591711	White flower	14.750
	SRR3591712	Green floral bud	6.867
	SRR3591713	Yellow flower	4.115
SRP173429	SRR8316895	Juvenile bud stage	2.425
	SRR8316896	Juvenile bud stage	1.959
	SRR8316897	Juvenile bud stage	1.349
	SRR8316894	Third green stage	1.150
	SRR8316900	Third green stage	4.046
	SRR8316901	Third green stage	4.347
	SRR8316898	Complete white stage	3.586
	SRR8316899	Complete white stage	16.403
	SRR8316903	Complete white stage	3.398
	SRR8316902	Silver flowering stage	1.956
	SRR8316904	Silver flowering stage	1.556
	SRR8316905	Silver flowering stage	0.931
	SRR8316906	Gold flowering stage	2.022
	SRR8316907	Gold flowering stage	2.126
	SRR8316908	Gold flowering stage	2.766
SRP132670	SRR6706286	Control	6.088
	SRR6706287	Light intensity 50%	4.469
	SRR6706288	Light intensity 20%	4.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.413
	CNS0095593	Slightly white alabastrum(diploid) 2	12.958
	CNS0095594	Slightly white alabastrum(diploid) 3	6.853
	CNS0095595	Whole white alabastrum(diploid) 2	5.897
	CNS0095596	Whole white alabastrum(diploid) 3	0.588
	CNS0095597	Whole white alabastrum(diploid) 4	5.444
	CNS0095598	Silvery flower (diploied) 1	12.381
	CNS0095599	Silvery flower (diploied) 2	9.755
	CNS0095600	Silvery flower (diploied) 3	7.686
	CNS0095601	Golden flower (diploid) 1	9.895
	CNS0095602	Golden flower (diploid) 2	10.890
	CNS0095603	Golden flower (diploid) 3	8.496
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.881
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.582
	CNS0095610	Silvery flower (tetraploid) 1	3.300
	CNS0095611	Silvery flower (tetraploid) 2	2.864
	CNS0095612	Silvery flower (tetraploid) 3	2.546
	CNS0095613	Golden flower (tetraploid) 1	1.641
	CNS0095614	Golden flower (tetraploid) 2	2.808
	CNS0095615	Golden flower (tetraploid) 3	0.917
CRA001975	CRR073297	Stem 1	3.243
	CRR073298	Stem 2	2.505
	CRR073299	Stem 3	3.047
	CRR073300	Leaf 1	5.618
	CRR073301	Leaf 2	6.601
	CRR073302	Leaf 3	5.191
	CRR073303	Juvenile bud 1	5.685
	CRR073304	Juvenile bud 2	4.951
	CRR073305	Juvenile bud 3	9.393
	CRR073306	Third green 1	2.950
	CRR073307	Third green 2	3.894
	CRR073308	Third green 3	4.635
	CRR073309	Second white 1	1.118
	CRR073310	Second white 2	1.410
	CRR073311	Second white 3	1.250
	CRR073312	Silver flowering 1	0.976
	CRR073313	Silver flowering 2	0.376
	CRR073314	Silver flowering 3	1.372
	CRR073315	Gold flowering 1	4.487
	CRR073316	Gold flowering 2	9.275
	CRR073317	Gold flowering 3	7.059
	CRR073318	Tawny withering 1	16.033
	CRR073319	Tawny withering 2	28.540
	CRR073320	Tawny withering 3	20.021