Gene detail

Detail information of GWHGAAZE022761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00411.1	1.8254E-121	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LMG8\|SNP30_ARATH	5E-105	Putative SNAP25 homologous protein SNAP30
trEMBL	tr\|A0A068TVX5\|A0A068TVX5_COFCA	7E-122	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00411.1}
TAIR10	AT1G13890.1	7E-79	soluble N-ethylmaleimide-sensitive factor adaptor protein 30

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78188954	78190419	+
GWHAAZE00000006	mRNA	78188954	78190419	+
GWHAAZE00000006	exon	78188954	78189367	+
GWHAAZE00000006	exon	78189518	78189611	+
GWHAAZE00000006	exon	78189888	78190018	+
GWHAAZE00000006	exon	78190110	78190207	+
GWHAAZE00000006	exon	78190320	78190419	+
GWHAAZE00000006	CDS	78188954	78189367	+
GWHAAZE00000006	CDS	78189518	78189611	+
GWHAAZE00000006	CDS	78189888	78190018	+
GWHAAZE00000006	CDS	78190110	78190207	+
GWHAAZE00000006	CDS	78190320	78190419	+

Transcript Sequence
>GWHTAAZE022791 AAAATGTTTGGTTTTAAAAAATCGCCGGCCAATAATAATACTAACAATGCTCAAACCCACAACCCCGGTAGAAGAACTGCATCCGAACCTACGCTCAATGTACCAGACTTAAAATCAAACCCTTTTGATGATGATGACGATGATTACTTTGGAAAAGGGGCAACTAAGAACAAACCCAAGGGTAGGGCCCATGGCTCAGCTTCAGCGGACTTCGATAGCATGTCTGTTCAAGAATTGGAGACTTATGCTGTGGACAAGTCTAAAGAGACTACAGACACGGTCAATAACTGCTTAAAAATTGCGGAAAACATTAGAGGAGATGCTACTAGAACACTTGATACTCTGCATCAGCAAGGTGAGCAAATCGAAAGGACCCACCATATGGCTGCTGATATGGACAAAGATTTAAGCAAGGGGGAGAAATTGTTGAATAACCTCGGGGGAATGTTCTCTATGCCTTGGAAGCCAACGAAGACAAAAAAAATTGATGGGCCAACAATCACAAAAGATGATAATAACTATAAATCAAAGAAAAGTAGAGCAGAGCAAAGGGAAAAGTTGGGTTTAGCTCCTGCACCGAAAGGAAAGTCCACCTCGAAAACACCTTCCGAGCCAACTAATGCTTTACAGCAAGTTGAGTTGGAGAAGCAAAAGCAAGATGACGGACTTGACGATCTTAGCAATATTTTGGGTGATTTGAAGGGTATGGCTGTTGACATGGGATCTGAACTTGATAGGCAAAACAAGGCTCTTGATCATCTTCAAGAGGATGTGGACGAGCTAAACTCGCGAGTGAAAGGTGCGAATCAACGTGCACGCAAGTTGCTTAACAAGTGA

Network for GWHGAAZE022761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18211	SNAP25	Insulin secretion	map04911
K18211	SNAP25	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.232
	SRR3591706	second leaf	1.196
	SRR3591707	mature leaf	1.292
	SRR3591708	Shoot apex	0.695
	SRR3591709	Stem	0.903
	SRR3591710	White floral bud	68.702
	SRR3591711	White flower	2.226
	SRR3591712	Green floral bud	105.258
	SRR3591713	Yellow flower	0.407
SRP173429	SRR8316895	Juvenile bud stage	4.640
	SRR8316896	Juvenile bud stage	30.914
	SRR8316897	Juvenile bud stage	16.845
	SRR8316894	Third green stage	16.686
	SRR8316900	Third green stage	112.157
	SRR8316901	Third green stage	101.132
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.099
	SRR8316903	Complete white stage	0.116
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	1.049
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	76.683
	SRR6706287	Light intensity 50%	74.586
	SRR6706288	Light intensity 20%	60.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.413
	CNS0095593	Slightly white alabastrum(diploid) 2	58.780
	CNS0095594	Slightly white alabastrum(diploid) 3	79.453
	CNS0095595	Whole white alabastrum(diploid) 2	243.552
	CNS0095596	Whole white alabastrum(diploid) 3	283.686
	CNS0095597	Whole white alabastrum(diploid) 4	375.792
	CNS0095598	Silvery flower (diploied) 1	0.872
	CNS0095599	Silvery flower (diploied) 2	3.776
	CNS0095600	Silvery flower (diploied) 3	0.717
	CNS0095601	Golden flower (diploid) 1	1.290
	CNS0095602	Golden flower (diploid) 2	0.608
	CNS0095603	Golden flower (diploid) 3	0.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	165.919
	CNS0095605	Slightly white alabastrum(tetraploid) 2	187.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	413.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	472.814
	CNS0095609	Whole white alabastrum(tetraploid) 3	212.316
	CNS0095610	Silvery flower (tetraploid) 1	0.346
	CNS0095611	Silvery flower (tetraploid) 2	3.545
	CNS0095612	Silvery flower (tetraploid) 3	10.645
	CNS0095613	Golden flower (tetraploid) 1	1.149
	CNS0095614	Golden flower (tetraploid) 2	0.060
	CNS0095615	Golden flower (tetraploid) 3	7.382
CRA001975	CRR073297	Stem 1	12.192
	CRR073298	Stem 2	16.776
	CRR073299	Stem 3	6.933
	CRR073300	Leaf 1	100.387
	CRR073301	Leaf 2	54.763
	CRR073302	Leaf 3	29.229
	CRR073303	Juvenile bud 1	68.850
	CRR073304	Juvenile bud 2	47.816
	CRR073305	Juvenile bud 3	2.875
	CRR073306	Third green 1	15.339
	CRR073307	Third green 2	20.950
	CRR073308	Third green 3	16.744
	CRR073309	Second white 1	0.208
	CRR073310	Second white 2	5.228
	CRR073311	Second white 3	2.436
	CRR073312	Silver flowering 1	12.232
	CRR073313	Silver flowering 2	14.204
	CRR073314	Silver flowering 3	8.797
	CRR073315	Gold flowering 1	16.642
	CRR073316	Gold flowering 2	4.243
	CRR073317	Gold flowering 3	6.269
	CRR073318	Tawny withering 1	11.295
	CRR073319	Tawny withering 2	18.008
	CRR073320	Tawny withering 3	12.595