Detail information of GWHGAAZE022766


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00402.16.76E-129unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TWH3|A0A068TWH3_COFCA3E-129Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00402.1}
TAIR10AT1G69330.15E-71RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7821692978217717-
GWHAAZE00000006mRNA7821692978217717-
GWHAAZE00000006exon7821692978217717-
GWHAAZE00000006CDS7821692978217717-
Transcript Sequence

Network for GWHGAAZE022766

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.7zf-RING_UBOX45845.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.266
SRR3591706second leaf18.490
SRR3591707mature leaf17.280
SRR3591708Shoot apex32.157
SRR3591709Stem52.636
SRR3591710White floral bud42.165
SRR3591711White flower22.638
SRR3591712Green floral bud64.824
SRR3591713Yellow flower24.888
SRP173429 SRR8316895Juvenile bud stage 10.431
SRR8316896Juvenile bud stage 21.456
SRR8316897Juvenile bud stage 12.363
SRR8316894Third green stage 10.459
SRR8316900Third green stage 39.835
SRR8316901Third green stage 34.157
SRR8316898Complete white stage 8.325
SRR8316899Complete white stage 18.092
SRR8316903Complete white stage 13.712
SRR8316902Silver flowering stage7.685
SRR8316904Silver flowering stage11.771
SRR8316905Silver flowering stage5.719
SRR8316906Gold flowering stage 13.947
SRR8316907Gold flowering stage 14.014
SRR8316908Gold flowering stage 18.954
SRP132670SRR6706286Control8.514
SRR6706287Light intensity 50%10.276
SRR6706288Light intensity 20%10.587
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.106
CNS0095593Slightly white alabastrum(diploid) 230.089
CNS0095594Slightly white alabastrum(diploid) 336.053
CNS0095595Whole white alabastrum(diploid) 246.803
CNS0095596Whole white alabastrum(diploid) 352.410
CNS0095597Whole white alabastrum(diploid) 447.006
CNS0095598Silvery flower (diploied) 18.596
CNS0095599Silvery flower (diploied) 210.936
CNS0095600Silvery flower (diploied) 322.180
CNS0095601Golden flower (diploid) 111.430
CNS0095602Golden flower (diploid) 221.319
CNS0095603Golden flower (diploid) 318.752
CNS0095604Slightly white alabastrum(tetraploid) 147.442
CNS0095605Slightly white alabastrum(tetraploid) 246.530
CNS0095606Slightly white alabastrum(tetraploid) 322.349
CNS0095607Whole white alabastrum(tetraploid) 160.894
CNS0095608Whole white alabastrum(tetraploid) 262.933
CNS0095609Whole white alabastrum(tetraploid) 345.360
CNS0095610Silvery flower (tetraploid) 123.642
CNS0095611Silvery flower (tetraploid) 228.525
CNS0095612Silvery flower (tetraploid) 328.603
CNS0095613Golden flower (tetraploid) 114.368
CNS0095614Golden flower (tetraploid) 220.777
CNS0095615Golden flower (tetraploid) 324.683
CRA001975CRR073297Stem 115.808
CRR073298Stem 212.225
CRR073299Stem 39.482
CRR073300Leaf 121.678
CRR073301Leaf 214.812
CRR073302Leaf 316.994
CRR073303Juvenile bud 116.803
CRR073304Juvenile bud 217.909
CRR073305Juvenile bud 312.479
CRR073306Third green 116.086
CRR073307Third green 210.253
CRR073308Third green 311.951
CRR073309Second white 114.460
CRR073310Second white 25.330
CRR073311Second white 37.534
CRR073312Silver flowering 110.606
CRR073313Silver flowering 28.705
CRR073314Silver flowering 34.128
CRR073315Gold flowering 111.862
CRR073316Gold flowering 29.252
CRR073317Gold flowering 36.217
CRR073318Tawny withering 121.249
CRR073319Tawny withering 224.481
CRR073320Tawny withering 314.368