Gene detail

Detail information of GWHGAAZE022773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00386.1	1.5809E-140	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9XI90\|WRKY4_ARATH	7E-90	Probable WRKY transcription factor 4
trEMBL	tr\|A0A068TVV4\|A0A068TVV4_COFCA	6E-141	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00386.1}
TAIR10	AT1G13960.1	2E-58	WRKY DNA-binding protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78304504	78308134	+
GWHAAZE00000006	mRNA	78304504	78308134	+
GWHAAZE00000006	exon	78304504	78304953	+
GWHAAZE00000006	exon	78307511	78308134	+
GWHAAZE00000006	CDS	78304504	78304953	+
GWHAAZE00000006	CDS	78307511	78308134	+

Transcript Sequence
>GWHTAAZE022803 ATGGAGGAGAACGAAGAATCGTCATCATTGAGACCTTCGTCGTCATCATCATCTCTCCGCCCTACGATCGCCCTACCACCACGGTCTTCTATGGAGAGCCTCTTCGCCGGCGGTCCTGGGGCGGCGAGTCCTGGACCTATGACTCTGGTCTCCAATTTCTTCTCCGAGAACGATCCGGACTCCGATTGCCGCTCTTTCTCTCAGCTCCTTGCCGGAGCCATGAATTCACCGGCAGTGGTTTCTGGATACCGGCCGAGCTTTCCGCCGGCGGATGATTCTTCATCAAACGGTAGAGATGCCGGCGGAGGCGGTGACTTCGATTTCCGGTTCAATAATAATAATCACCGGCCGTCCGGTTTAATTGTTTCTCAGCCATCGACTTTTACAATACCTCCCGGTTTGAGTCCTGCTACGTTGCTTGATTCCCCAGGGTTTTTTCCTCCCGCTCAGGGTCCTTTCCAGCAGGTCCTGGCGCAGGTTACTGCCCAGGCAAATGCATCATTGCCTCAGGTTCCGTATGTTACTTCCAATACAACTGCACACCAGCAAATGCCACGTCATAGTATGATGCAAGAATCATCAGATTTATCTCATTCTGATCAAAGATCCCAACCTTCTGCCTTTACTGTTGATAAGCCTAGTGATGATGGTTACAACTGGCGCAAGTACGGGCAAAAGCAGGTGAAAGGCAGTGAATATCCTCGAAGTTACTATAAATGCACGCACGCGAATTGCCCTGTTAAGAAAAAGGTTGAGCGTTCTGTTGATGGCCAAGTCACTGAGATTATCTATAAGGGCCAGCACAATCATCAGCGGCCTCAACCCAGTAAACGTGGAAAAGATACTGGAAATCCAAATGAAACCTTAAATCCTCAGGGGAACTCTGAACTGGGTTTTGAGGGTCAGAATGCTAATTTCAACAAATTTAAGGACGGGGTGCAGGCTTATTCACTGTCTATGAAGGACCAAGAATCGAGCCAGGCTACACCTGATAATTTAGGAGGATCGAGTGATAGTGAAGAAGTGGGTGATGCTGAAACTGGAGCAGATGAAGATGAACCTGAAGCAAAGAGA

Network for GWHGAAZE022773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	215	271	6.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.501
	SRR3591706	second leaf	9.276
	SRR3591707	mature leaf	19.258
	SRR3591708	Shoot apex	7.812
	SRR3591709	Stem	16.541
	SRR3591710	White floral bud	31.256
	SRR3591711	White flower	37.582
	SRR3591712	Green floral bud	14.567
	SRR3591713	Yellow flower	34.612
SRP173429	SRR8316895	Juvenile bud stage	4.860
	SRR8316896	Juvenile bud stage	7.042
	SRR8316897	Juvenile bud stage	1.690
	SRR8316894	Third green stage	3.048
	SRR8316900	Third green stage	8.682
	SRR8316901	Third green stage	8.317
	SRR8316898	Complete white stage	10.582
	SRR8316899	Complete white stage	18.556
	SRR8316903	Complete white stage	14.116
	SRR8316902	Silver flowering stage	12.692
	SRR8316904	Silver flowering stage	17.773
	SRR8316905	Silver flowering stage	7.781
	SRR8316906	Gold flowering stage	31.775
	SRR8316907	Gold flowering stage	28.670
	SRR8316908	Gold flowering stage	36.074
SRP132670	SRR6706286	Control	14.230
	SRR6706287	Light intensity 50%	13.708
	SRR6706288	Light intensity 20%	14.421
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.539
	CNS0095593	Slightly white alabastrum(diploid) 2	4.480
	CNS0095594	Slightly white alabastrum(diploid) 3	4.123
	CNS0095595	Whole white alabastrum(diploid) 2	3.972
	CNS0095596	Whole white alabastrum(diploid) 3	1.555
	CNS0095597	Whole white alabastrum(diploid) 4	4.575
	CNS0095598	Silvery flower (diploied) 1	11.333
	CNS0095599	Silvery flower (diploied) 2	9.675
	CNS0095600	Silvery flower (diploied) 3	30.986
	CNS0095601	Golden flower (diploid) 1	11.332
	CNS0095602	Golden flower (diploid) 2	31.860
	CNS0095603	Golden flower (diploid) 3	30.715
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.216
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.370
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.437
	CNS0095610	Silvery flower (tetraploid) 1	24.202
	CNS0095611	Silvery flower (tetraploid) 2	29.466
	CNS0095612	Silvery flower (tetraploid) 3	47.962
	CNS0095613	Golden flower (tetraploid) 1	12.976
	CNS0095614	Golden flower (tetraploid) 2	21.682
	CNS0095615	Golden flower (tetraploid) 3	46.045
CRA001975	CRR073297	Stem 1	13.564
	CRR073298	Stem 2	13.162
	CRR073299	Stem 3	10.416
	CRR073300	Leaf 1	17.284
	CRR073301	Leaf 2	16.453
	CRR073302	Leaf 3	16.110
	CRR073303	Juvenile bud 1	11.741
	CRR073304	Juvenile bud 2	16.668
	CRR073305	Juvenile bud 3	18.127
	CRR073306	Third green 1	25.769
	CRR073307	Third green 2	22.853
	CRR073308	Third green 3	23.990
	CRR073309	Second white 1	18.848
	CRR073310	Second white 2	26.719
	CRR073311	Second white 3	24.489
	CRR073312	Silver flowering 1	19.738
	CRR073313	Silver flowering 2	23.653
	CRR073314	Silver flowering 3	19.443
	CRR073315	Gold flowering 1	11.992
	CRR073316	Gold flowering 2	20.850
	CRR073317	Gold flowering 3	14.394
	CRR073318	Tawny withering 1	15.337
	CRR073319	Tawny withering 2	13.108
	CRR073320	Tawny withering 3	12.000