Gene detail

Detail information of GWHGAAZE022779

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002267746.1	PREDICTED: protein argonaute 7 [Vitis vinifera]
Swissprot	tr\|Q9C793\|AGO7_ARATH	Protein argonaute 7
trEMBL	tr\|F6H5X3\|F6H5X3_VITVI	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G69440.1	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78400648	78404367	-
GWHAAZE00000006	mRNA	78400648	78404367	-
GWHAAZE00000006	exon	78400648	78402103	-
GWHAAZE00000006	exon	78402198	78403434	-
GWHAAZE00000006	exon	78404031	78404367	-
GWHAAZE00000006	CDS	78404031	78404367	-
GWHAAZE00000006	CDS	78402198	78403434	-
GWHAAZE00000006	CDS	78400648	78402103	-

Transcript Sequence
>GWHTAAZE022809 ATGGAAGAAACAGAGGAGTTCAATCCTAACCAGAAATGTATACCTAAAATAAGGAGTTTTAGAGGTAGAAATAACCCACATAACAATCACTATCAACATCACCTACTTCAGAACTCAAATAGGATTGGATTTTGCAACCAAAATCAGTACCAGACATACCCAGCTCTTCTTCCTCTGCCTCCTACTATACCTCTGCCACTATGTTTAGCTCCAACTTTTCCTCAAAATCAAAACTTTAGAAGCAAAGCCCATTTGCAGAAACCTTCGTGGAAGCACAATAATCCTCCTATTGCCACCTCCTCTGATACCAATATTTCTGATTTCTCTGTTACACCAGATCCACATGAGGTTAAAGGGCAAACTGCCTTAGCGACTAGAGGGAAGAAAGAGGGAATTAAGGTTATGAGTGCCACCCCGCAACCACTAGTGGTGGCAAGAAGACCAGATTCTGGGGGCGTAGAAGGCCCAGTTATCTCTCTTCTCGCCAATCATTTCCTAGTCCAATTCGACCCGTCACAAAGGATTTTCCACTATGATGTTGAAATATCTCCAAGTCCTTCGAAAGAAGTTGCTCGAATGATTAAGCAAAAATTAGTTGAAGACAACATAAATGTGCTCTCCGGTGCTCTTCCGGCCTATGATGGACGAAAGAATCTCTATAGCCCTGTCGAATTCAAGAACGATAGGCTCGAGATTTACATTAGCCTCCCTATCTTTAATGGAAAGCCAATATTGCCACCCAAAGAAAGAATCAACTCGCAAGAAAAGCAAGAACAGATCAAGCTTTTCCGAATAAACATCAAGCTCGTGTCAAAGATTGATGGCTGGGAACTAAGCAACTACTTGAGCAAAGATGGGGACGATTGGGTTCCACTCCCTCAAGATTATCTCCACGCTTTAGATGTTGTTTTGCGAGAAAACCCAACTGAGAAATGCATACCTGTGGGGCGATCGCTTTACTCAAATTCAATGGGAGGGGCTAAAGATATTGGGGGAGGGGCATTAGGACTACGTGGGTTCTTTCAAAGCCTTAGACCTACACAACAAGGACTTGCTATGAATGTTGATTTCTCTGTGACTGCTTTCCATGAAAGTATTGGAGTAATTCCATACTTGCGAAAGCGTCTTGAGTTTTTGCACGACCTTTCTCAGAGAAAGACTCGAGGTTTGACAGGTGAGGAGAAGAAGGAAGTGGAGAAGGCACTTAAAAACATAAGGGTCTTTGTTTGCCATAGAGAGACGGTTCAAAGATATCAAGTTTATAGCTTAACAGAAGAAACAACAGAGAACCTCTGGTTTAAAGAGAGGGATGGGACGAACTTGAGGCTCGTGAATTACTTCCAGGATCAGTATAAGTATGATATACAGTACAGGAACCTGCCGTGCTTGCAGATTAGCAGAAGGAAACCATGTTACCTTCCTATGGAGCTTTGTGTTATTTGCGAAGGACAGAAGTTTCTAGGGAAGCTCTCGGATGATCAGACAGCTAGGATTCTGAAGATGGGCTGCCAAAGACCAAGAGAAAGAAAGGAGATCATTGATGGTGTTATGGCTGGACCAGTTGGACCAACAAGTGGCAATCAGGGAAGAGAGTTTAAACTCCACATTTCAAGAGAAATGACGCGTTTAAATGGGAGAATACTTCAACCTCCTAAGCTTAAGCTCGGGGACGGTGGCCATATAAGAGATCTAACTCCTTCTCGTCGTGATCGACAGTGGAACCTTTTGGACAGCCATGTCTTTGAGGGCACTCGAATCGACCGGTGGGCACTTATAAGTTTTGGTGGAACCATTGATCAGAAGTCCAACATACCAAAATTCATAAACCAGTTAACTCAAAGGTGTGAGCAATTGGGCATTTTGCTCAACAAGAACACAATTGTTAACCCCCAATATGAACCCATGCAATTGCTCAACAATGTTACCCTCTTAGAATCCAAACTCAAGAAAATCCGCAGAGCTGCATTCAACAATCTCCAACTCCTTATTTGCGTGATGGAGAAACGGCACAAGGGTTACGGAGATTTGAAGCGAATTGCAGAGACAAGTGTTGGGGTTGTAAGCCAGTGCTGCCTGTACTCGAATCTTAGCAAGTTCAGTTCACAGTTTCTTGCGAATTTGGCTCTCAAGATCAATGCTAAAGTTGGCGGTTGCACCGTTGCATTGTACAACTCATTACCTTCACAAATCCCAAGGATTCTACGGCTCGATGAGCCGGTGATCTTTATGGGGGCTGATGTGACTCACCCTCACCCACTAGACGACTCTAGCCCCTCTGTAGCCGCTGTGGTGGGTAGTGTGAACTGGCCAGCTGCAAATCGGTACGTTTCAAGAATGAGGTCTCAAACGCATCGACAAGAGATCATCGAGGATCTTAGTGCAATGGTGAAAGAAATACTAGATGATTTCTATCGCGAGCAATCCAAACTTCCCACGAGGATTATTTTCTTCAGAGATGGAGTTAGCGAAACCCAATTCTACAAAGTTCTTGAAGATGAACTACAAGCCATTAAGGTGGCATGTTCAAGATTCCTGGCTTATAAGCCTCCCATTACTTTTGCAGTAGTCCAAAAGAGGCACCACACAAGGCTGTTCCCAAACGAAACCAATTCTTCGGCTAGAAATCAATTCTTTGATGAAAATGTTCCACCGGGGACGGTTGTCGACACGGTGATCACTCACCCGAGGGAGTTCGATTTCTATCTTTGCAGCCATTGGGGGGTGAAGGGAACGAGCCGGCCTACTCATTATCATGTATTGTGGGATGAAAACCAATTCACTTCTGATGAGCTACAAAAGCTAGTTTACAATCTTTGCTATACATTTGTAAGGTGTACAAAGCCTGTTTCTTTGGTTCCCCCTGCTTATTATGCCCACCTTGCTGCATACAGGGGAAGGCTTTACCTGGAGCGCTCAGATTCAGCACCTTATACGAGAAGTGCATCCACGTTTTCCCGTGCCTCCGCACCTAAGGCGGCTCCTCTTCCAAAACTTAGTGAGAATGTTAAGAATCTGATGTTTTATTGCTGA

Network for GWHGAAZE022779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	158	304	5.60E-26
PF08699.11	ArgoL1	314	363	1.10E-14
PF02170.23	PAZ	376	498	2.70E-20
PF02171.18	Piwi	662	967	7.10E-97

Protein Sequence

>GWHPAAZE022795
MEETEEFNPNQKCIPKIRSFRGRNNPHNNHYQHHLLQNSNRIGFCNQNQYQTYPALLPLPPTIPLPLCLAPTFPQNQNFRSKAHLQKPSWKHNNPPIATSSDTNISDFSVTPDPHEVKGQTALATRGKKEGIKVMSATPQPLVVARRPDSGGVEGPVISLLANHFLVQFDPSQRIFHYDVEISPSPSKEVARMIKQKLVEDNINVLSGALPAYDGRKNLYSPVEFKNDRLEIYISLPIFNGKPILPPKERINSQEKQEQIKLFRINIKLVSKIDGWELSNYLSKDGDDWVPLPQDYLHALDVVLRENPTEKCIPVGRSLYSNSMGGAKDIGGGALGLRGFFQSLRPTQQGLAMNVDFSVTAFHESIGVIPYLRKRLEFLHDLSQRKTRGLTGEEKKEVEKALKNIRVFVCHRETVQRYQVYSLTEETTENLWFKERDGTNLRLVNYFQDQYKYDIQYRNLPCLQISRRKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPRERKEIIDGVMAGPVGPTSGNQGREFKLHISREMTRLNGRILQPPKLKLGDGGHIRDLTPSRRDRQWNLLDSHVFEGTRIDRWALISFGGTIDQKSNIPKFINQLTQRCEQLGILLNKNTIVNPQYEPMQLLNNVTLLESKLKKIRRAAFNNLQLLICVMEKRHKGYGDLKRIAETSVGVVSQCCLYSNLSKFSSQFLANLALKINAKVGGCTVALYNSLPSQIPRILRLDEPVIFMGADVTHPHPLDDSSPSVAAVVGSVNWPAANRYVSRMRSQTHRQEIIEDLSAMVKEILDDFYREQSKLPTRIIFFRDGVSETQFYKVLEDELQAIKVACSRFLAYKPPITFAVVQKRHHTRLFPNETNSSARNQFFDENVPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSDSAPYTRSASTFSRASAPKAAPLPKLSENVKNLMFYC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.944
	SRR3591706	second leaf	0.707
	SRR3591707	mature leaf	0.143
	SRR3591708	Shoot apex	7.708
	SRR3591709	Stem	1.558
	SRR3591710	White floral bud	0.137
	SRR3591711	White flower	0.297
	SRR3591712	Green floral bud	0.020
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.357
	SRR8316896	Juvenile bud stage	0.304
	SRR8316897	Juvenile bud stage	0.066
	SRR8316894	Third green stage	0.142
	SRR8316900	Third green stage	0.277
	SRR8316901	Third green stage	0.154
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.068
	SRR8316903	Complete white stage	0.068
	SRR8316902	Silver flowering stage	0.076
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.105
	SRR6706287	Light intensity 50%	0.141
	SRR6706288	Light intensity 20%	0.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.357
	CNS0095593	Slightly white alabastrum(diploid) 2	0.336
	CNS0095594	Slightly white alabastrum(diploid) 3	0.136
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.924
	CNS0095599	Silvery flower (diploied) 2	0.467
	CNS0095600	Silvery flower (diploied) 3	0.161
	CNS0095601	Golden flower (diploid) 1	0.107
	CNS0095602	Golden flower (diploid) 2	0.208
	CNS0095603	Golden flower (diploid) 3	0.209
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.114
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.017
	CNS0095610	Silvery flower (tetraploid) 1	0.026
	CNS0095611	Silvery flower (tetraploid) 2	0.118
	CNS0095612	Silvery flower (tetraploid) 3	0.048
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.017
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.106
	CRR073298	Stem 2	0.626
	CRR073299	Stem 3	1.328
	CRR073300	Leaf 1	0.145
	CRR073301	Leaf 2	0.452
	CRR073302	Leaf 3	0.123
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.074
	CRR073305	Juvenile bud 3	0.172
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.046
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.088
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.125
	CRR073314	Silver flowering 3	0.080
	CRR073315	Gold flowering 1	0.659
	CRR073316	Gold flowering 2	0.376
	CRR073317	Gold flowering 3	0.060
	CRR073318	Tawny withering 1	0.584
	CRR073319	Tawny withering 2	0.779
	CRR073320	Tawny withering 3	0.807