Gene detail

Detail information of GWHGAAZE022780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG29816.1	0	Dual specificity protein kinase splA [Gossypium arboreum]
COG	YP_004582129.1	7E-30	serine/threonine protein kinase
Swissprot	tr\|Q2MHE4\|HT1_ARATH	3E-48	Serine/threonine-protein kinase HT1
trEMBL	tr\|M1CR37\|M1CR37_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400072865}
TAIR10	AT1G14000.1	0	VH1-interacting kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78437925	78442694	+
GWHAAZE00000006	mRNA	78437925	78442694	+
GWHAAZE00000006	exon	78437925	78438224	+
GWHAAZE00000006	exon	78439787	78439861	+
GWHAAZE00000006	exon	78440061	78440177	+
GWHAAZE00000006	exon	78440494	78440588	+
GWHAAZE00000006	exon	78440953	78441073	+
GWHAAZE00000006	exon	78441199	78441278	+
GWHAAZE00000006	exon	78441754	78441813	+
GWHAAZE00000006	exon	78441965	78442086	+
GWHAAZE00000006	exon	78442194	78442279	+
GWHAAZE00000006	exon	78442364	78442479	+
GWHAAZE00000006	exon	78442568	78442694	+
GWHAAZE00000006	CDS	78437925	78438224	+
GWHAAZE00000006	CDS	78439787	78439861	+
GWHAAZE00000006	CDS	78440061	78440177	+
GWHAAZE00000006	CDS	78440494	78440588	+
GWHAAZE00000006	CDS	78440953	78441073	+
GWHAAZE00000006	CDS	78441199	78441278	+
GWHAAZE00000006	CDS	78441754	78441813	+
GWHAAZE00000006	CDS	78441965	78442086	+
GWHAAZE00000006	CDS	78442194	78442279	+
GWHAAZE00000006	CDS	78442364	78442479	+
GWHAAZE00000006	CDS	78442568	78442694	+

Transcript Sequence
>GWHTAAZE022810 ATGAGTGCGATCGAAGGCCATCCGACCGGCGGAGGGGGAGATACGTCGGCGCCAGCGGTAGAGAAGAAGAAAGAGAAGGCTAGGGTTAGCCGGACGTCGCTCATACTGTGGCACGCTCATCAAAACGACGCCGCCGCGGTCAGGAAGCTGCTGGAGGAAGATCGCTCACTCGTTCACGCTATGGATTACGATAATCGGACTCCTCTTCACGTTGCTTCACTTCACGGTTGGATGGATGTTGCCAAATGTTTGATTGAGTACGGTGCTGATGTTAACGCCCAAGATCGATGGAAGAATACTCCCCTAGCTGATGCAGAAGGTGCTAAAAAAGAAGACATGATTGAGTTGCTAAAGTCACATGGTGGCCTGTCTTATGGCCAGAATGGAAGCCATTTTGAAGCAAAGCCTGTTCCACCCCCTCTACCAAATAAGTGTGACTGGGAAATTGACCCTTCTGAGCTGGACTTCTCAAACTCAGCTATTATAGGGAAGGGTTCCTTCGGTGAGATTTTAAAAGCAACTTGGCGTGGTACACCTGTAGCTGTCAAACGCATTCTTCCTAGTCTTTCAGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTGAATTTGCTTGTGAAGCTTCGCCACCCTAATATAGTGCAATTTCTTGGAGCTGTTACTGAAAAGAAACCGTTAATGTTGATTACAGAATATTTGCGTGGGGGTGATCTTCATCAGTACCTGAAGGAAAAGGGTGCACTTACTCCATCGACAGCTGTCAGCTTTGCATTGGACATTGCCAGAGGCATGGCTTATCTTCACAATGAGCCAAATGTCATAGTCCACAGAGACTTGAAACCAAGGAATGTTCTTCTAGTCAACACAAACGCTGACCATCTGAAAGTCGGAGACTTTGGGCTAAGCAAGCTTGTTAGGGTTAAAAATTCTCATGATGTCTACAAAATGACTGGCGAGACTGGAAGCTACCGGTATATGGCTCCTGAAGTCTTCAAGCACCGTAAATATGATAAGAAGGTTGATGTTTTCTCATTCGCAATGATACTATACGAGATGCTTGAAGGTGACCCACCTTTATCACACTATGAACCTTATGAAGCAGCCAAATACGTAGCGGAAGGACATAGGCCTATTTTTAGGGCAAAAAGTTACAGTCCTGAGTTGAGAGAGTTAACAGAGCAATGCTGGGCCCCAGATATGAACAAGAGACCGTCTTTCTTAGAGATTCTAAAGAGACTTGAGAAGATAAAGGAAACAGTGCCTGGGGATCATCACTGGAACATATTTACTTCTTGA

Network for GWHGAAZE022780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	31	95	2.00E-08
PF07714.18	PK_Tyr_Ser-Thr	160	414	2.80E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.251
	SRR3591706	second leaf	59.030
	SRR3591707	mature leaf	69.806
	SRR3591708	Shoot apex	63.926
	SRR3591709	Stem	82.350
	SRR3591710	White floral bud	90.696
	SRR3591711	White flower	105.308
	SRR3591712	Green floral bud	75.614
	SRR3591713	Yellow flower	132.563
SRP173429	SRR8316895	Juvenile bud stage	37.457
	SRR8316896	Juvenile bud stage	48.496
	SRR8316897	Juvenile bud stage	21.320
	SRR8316894	Third green stage	23.720
	SRR8316900	Third green stage	76.258
	SRR8316901	Third green stage	72.223
	SRR8316898	Complete white stage	46.526
	SRR8316899	Complete white stage	141.750
	SRR8316903	Complete white stage	69.267
	SRR8316902	Silver flowering stage	41.994
	SRR8316904	Silver flowering stage	57.644
	SRR8316905	Silver flowering stage	31.188
	SRR8316906	Gold flowering stage	91.080
	SRR8316907	Gold flowering stage	80.501
	SRR8316908	Gold flowering stage	98.554
SRP132670	SRR6706286	Control	58.700
	SRR6706287	Light intensity 50%	65.174
	SRR6706288	Light intensity 20%	72.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.081
	CNS0095593	Slightly white alabastrum(diploid) 2	34.569
	CNS0095594	Slightly white alabastrum(diploid) 3	33.913
	CNS0095595	Whole white alabastrum(diploid) 2	34.162
	CNS0095596	Whole white alabastrum(diploid) 3	31.647
	CNS0095597	Whole white alabastrum(diploid) 4	35.060
	CNS0095598	Silvery flower (diploied) 1	53.864
	CNS0095599	Silvery flower (diploied) 2	46.074
	CNS0095600	Silvery flower (diploied) 3	111.231
	CNS0095601	Golden flower (diploid) 1	52.582
	CNS0095602	Golden flower (diploid) 2	111.144
	CNS0095603	Golden flower (diploid) 3	108.446
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.844
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.615
	CNS0095610	Silvery flower (tetraploid) 1	117.561
	CNS0095611	Silvery flower (tetraploid) 2	126.360
	CNS0095612	Silvery flower (tetraploid) 3	90.818
	CNS0095613	Golden flower (tetraploid) 1	62.991
	CNS0095614	Golden flower (tetraploid) 2	103.353
	CNS0095615	Golden flower (tetraploid) 3	109.100
CRA001975	CRR073297	Stem 1	64.922
	CRR073298	Stem 2	55.257
	CRR073299	Stem 3	61.604
	CRR073300	Leaf 1	81.235
	CRR073301	Leaf 2	66.987
	CRR073302	Leaf 3	70.860
	CRR073303	Juvenile bud 1	77.127
	CRR073304	Juvenile bud 2	88.142
	CRR073305	Juvenile bud 3	90.139
	CRR073306	Third green 1	64.986
	CRR073307	Third green 2	61.921
	CRR073308	Third green 3	67.000
	CRR073309	Second white 1	41.113
	CRR073310	Second white 2	46.108
	CRR073311	Second white 3	36.367
	CRR073312	Silver flowering 1	24.472
	CRR073313	Silver flowering 2	23.162
	CRR073314	Silver flowering 3	20.916
	CRR073315	Gold flowering 1	49.031
	CRR073316	Gold flowering 2	68.792
	CRR073317	Gold flowering 3	54.092
	CRR073318	Tawny withering 1	66.970
	CRR073319	Tawny withering 2	48.909
	CRR073320	Tawny withering 3	52.618