Detail information of GWHGAAZE022789


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009360319.13.4064E-135PREDICTED: uncharacterized protein LOC103950805 isoform X2 [Pyrus x bretschneideri]
trEMBLtr|A0A068TWD3|A0A068TWD3_COFCA2E-133Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00352.1}
TAIR10AT1G14180.22E-45RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7860330478606008+
GWHAAZE00000006mRNA7860330478606008+
GWHAAZE00000006exon7860330478603374+
GWHAAZE00000006exon7860347378603542+
GWHAAZE00000006exon7860464778604674+
GWHAAZE00000006exon7860500378605037+
GWHAAZE00000006exon7860513378606008+
GWHAAZE00000006CDS7860330478603374+
GWHAAZE00000006CDS7860347378603542+
GWHAAZE00000006CDS7860464778604674+
GWHAAZE00000006CDS7860500378605037+
GWHAAZE00000006CDS7860513378606008+
Transcript Sequence

Network for GWHGAAZE022789

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.498
SRR3591706second leaf17.509
SRR3591707mature leaf19.972
SRR3591708Shoot apex38.354
SRR3591709Stem21.914
SRR3591710White floral bud18.138
SRR3591711White flower20.269
SRR3591712Green floral bud24.018
SRR3591713Yellow flower15.417
SRP173429 SRR8316895Juvenile bud stage 12.859
SRR8316896Juvenile bud stage 14.324
SRR8316897Juvenile bud stage 5.556
SRR8316894Third green stage 7.014
SRR8316900Third green stage 19.735
SRR8316901Third green stage 17.939
SRR8316898Complete white stage 3.331
SRR8316899Complete white stage 26.007
SRR8316903Complete white stage 5.943
SRR8316902Silver flowering stage3.180
SRR8316904Silver flowering stage4.280
SRR8316905Silver flowering stage2.962
SRR8316906Gold flowering stage 7.111
SRR8316907Gold flowering stage 6.304
SRR8316908Gold flowering stage 11.194
SRP132670SRR6706286Control22.285
SRR6706287Light intensity 50%21.846
SRR6706288Light intensity 20%21.294
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.218
CNS0095593Slightly white alabastrum(diploid) 212.775
CNS0095594Slightly white alabastrum(diploid) 313.419
CNS0095595Whole white alabastrum(diploid) 212.904
CNS0095596Whole white alabastrum(diploid) 38.246
CNS0095597Whole white alabastrum(diploid) 411.177
CNS0095598Silvery flower (diploied) 121.810
CNS0095599Silvery flower (diploied) 213.066
CNS0095600Silvery flower (diploied) 314.095
CNS0095601Golden flower (diploid) 116.706
CNS0095602Golden flower (diploid) 213.888
CNS0095603Golden flower (diploid) 313.820
CNS0095604Slightly white alabastrum(tetraploid) 119.843
CNS0095605Slightly white alabastrum(tetraploid) 215.993
CNS0095606Slightly white alabastrum(tetraploid) 334.642
CNS0095607Whole white alabastrum(tetraploid) 19.499
CNS0095608Whole white alabastrum(tetraploid) 27.627
CNS0095609Whole white alabastrum(tetraploid) 314.219
CNS0095610Silvery flower (tetraploid) 110.963
CNS0095611Silvery flower (tetraploid) 212.833
CNS0095612Silvery flower (tetraploid) 38.308
CNS0095613Golden flower (tetraploid) 18.280
CNS0095614Golden flower (tetraploid) 210.154
CNS0095615Golden flower (tetraploid) 37.758
CRA001975CRR073297Stem 127.933
CRR073298Stem 226.244
CRR073299Stem 332.189
CRR073300Leaf 129.416
CRR073301Leaf 225.879
CRR073302Leaf 320.043
CRR073303Juvenile bud 122.646
CRR073304Juvenile bud 215.088
CRR073305Juvenile bud 325.038
CRR073306Third green 13.989
CRR073307Third green 22.714
CRR073308Third green 34.131
CRR073309Second white 13.970
CRR073310Second white 24.662
CRR073311Second white 33.148
CRR073312Silver flowering 13.936
CRR073313Silver flowering 26.352
CRR073314Silver flowering 33.169
CRR073315Gold flowering 112.923
CRR073316Gold flowering 217.688
CRR073317Gold flowering 317.372
CRR073318Tawny withering 127.249
CRR073319Tawny withering 222.293
CRR073320Tawny withering 322.971