Gene detail

Detail information of GWHGAAZE022802

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG25683.1	5.5424E-132	E3 ubiquitin-protein ligase MARCH3 [Gossypium arboreum]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	0.000000004	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|A0A067L1Y9\|A0A067L1Y9_JATCU	3E-131	Uncharacterized protein {ECO:0000313\|EMBL:KDP41198.1}
TAIR10	AT3G47550.6	1E-63	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78753341	78757458	+
GWHAAZE00000006	mRNA	78753341	78757458	+
GWHAAZE00000006	exon	78753341	78753581	+
GWHAAZE00000006	exon	78754860	78754931	+
GWHAAZE00000006	exon	78755646	78755713	+
GWHAAZE00000006	exon	78755850	78756006	+
GWHAAZE00000006	exon	78756443	78756523	+
GWHAAZE00000006	exon	78756653	78756742	+
GWHAAZE00000006	exon	78757092	78757458	+
GWHAAZE00000006	five_prime_UTR	78753341	78753353	+
GWHAAZE00000006	CDS	78753354	78753581	+
GWHAAZE00000006	CDS	78754860	78754931	+
GWHAAZE00000006	CDS	78755646	78755713	+
GWHAAZE00000006	CDS	78755850	78756006	+
GWHAAZE00000006	CDS	78756443	78756523	+
GWHAAZE00000006	CDS	78756653	78756742	+
GWHAAZE00000006	CDS	78757092	78757214	+
GWHAAZE00000006	three_prime_UTR	78757215	78757458	+

Transcript Sequence
>GWHTAAZE022832 TTGGGGGGTTGTGATGGGCGATGATCACTTGGTTCTAGATGTTGACCGGCTTGTGAAGCCGGTGACAACTGGGGAAACGGTCCAAGAAATGACCGGTCCATCTAGGGCTGCGGAGGAGAAGGTTGTGATGGAGGAGGATGAGGAAGCACCGCTAATAACGTTGGCCGAATGTCGCATTTGCCAGGACGAGGATTCTATTCAGAATTTGGAGACTCCATGTGCTTGCAGCGGTAGTCTTAAGTATGCTCACAGAAAGTGTGTTCAACATTGGTGTGACGAAAAAGGAGACATAACTTGTGAAATTTGCCATCAGTCTTACCAACCTGGCTACATCGCGCCTCCTCCTCGACCTCGCCCAGAAGAGACTACTATTGATATTGGAGGAGGATGGCAAATCTCTGGCACACCTCTGGATTTACATGATCCTCGCCTTTTGGCTATCGCAGAGGCAGAGCGTCAATTTTTGGAAGCCGAGTATGATGACTATAATAACACAAATGCCAGTGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCTCTTCTGCTCTTGAGGCATGCACTGAGTGTAACAGACGCTGATGGTGAAGAAGATGCATCTACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGCTTTCTTCTGCCCTGCTATATCATGGCCTGGGCCATTAGCATTTTGCAGCGTCGAAGGCAAAGACAGGAGGCTGCAGCACTGGCGGCAACACAATTTGCATTTGTGGTACAATCAGGGCAAAGCAGGGGTCTGCATTTCACAATAGCATCAGCCCCAACCACAGTAGCTCCCCAGCAAGAACAAGCTTGATGACTACAAACTTGCGCAGTTTGTTATCAAGCCTTTTGGTATATTTTTAAATTTTCGTCCCGTTTATTCTATATTTGTGTATAGGTATCATCCGGCCAATTTCGGGAGGATATGGTTCTGTCATTCGACATTCACAGTTTTCTCCAGCTGTATTTTCTTTGTTCTTTTTCATCTGTACTTTTGTAATTACTGTTTCTTAATCCATTTGCACCGAAATATTTGTGTTGCTCCGACCAACATATAT

Network for GWHGAAZE022802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.8	RINGv	53	98	3.20E-13
PF12428.9	DUF3675	104	222	2.60E-46

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.246
	SRR3591706	second leaf	22.381
	SRR3591707	mature leaf	18.573
	SRR3591708	Shoot apex	43.452
	SRR3591709	Stem	55.986
	SRR3591710	White floral bud	62.520
	SRR3591711	White flower	25.934
	SRR3591712	Green floral bud	38.659
	SRR3591713	Yellow flower	23.970
SRP173429	SRR8316895	Juvenile bud stage	42.639
	SRR8316896	Juvenile bud stage	54.115
	SRR8316897	Juvenile bud stage	35.931
	SRR8316894	Third green stage	9.347
	SRR8316900	Third green stage	28.341
	SRR8316901	Third green stage	39.965
	SRR8316898	Complete white stage	10.881
	SRR8316899	Complete white stage	63.373
	SRR8316903	Complete white stage	14.440
	SRR8316902	Silver flowering stage	19.510
	SRR8316904	Silver flowering stage	15.975
	SRR8316905	Silver flowering stage	9.556
	SRR8316906	Gold flowering stage	31.231
	SRR8316907	Gold flowering stage	26.684
	SRR8316908	Gold flowering stage	25.624
SRP132670	SRR6706286	Control	28.568
	SRR6706287	Light intensity 50%	32.124
	SRR6706288	Light intensity 20%	29.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.172
	CNS0095593	Slightly white alabastrum(diploid) 2	87.052
	CNS0095594	Slightly white alabastrum(diploid) 3	67.347
	CNS0095595	Whole white alabastrum(diploid) 2	63.885
	CNS0095596	Whole white alabastrum(diploid) 3	42.548
	CNS0095597	Whole white alabastrum(diploid) 4	58.285
	CNS0095598	Silvery flower (diploied) 1	42.121
	CNS0095599	Silvery flower (diploied) 2	59.376
	CNS0095600	Silvery flower (diploied) 3	33.446
	CNS0095601	Golden flower (diploid) 1	65.055
	CNS0095602	Golden flower (diploid) 2	48.058
	CNS0095603	Golden flower (diploid) 3	48.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	80.824
	CNS0095608	Whole white alabastrum(tetraploid) 2	91.752
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.760
	CNS0095610	Silvery flower (tetraploid) 1	26.168
	CNS0095611	Silvery flower (tetraploid) 2	28.248
	CNS0095612	Silvery flower (tetraploid) 3	39.632
	CNS0095613	Golden flower (tetraploid) 1	27.314
	CNS0095614	Golden flower (tetraploid) 2	22.313
	CNS0095615	Golden flower (tetraploid) 3	35.287
CRA001975	CRR073297	Stem 1	42.582
	CRR073298	Stem 2	33.342
	CRR073299	Stem 3	42.735
	CRR073300	Leaf 1	46.656
	CRR073301	Leaf 2	49.987
	CRR073302	Leaf 3	55.103
	CRR073303	Juvenile bud 1	44.915
	CRR073304	Juvenile bud 2	36.677
	CRR073305	Juvenile bud 3	40.810
	CRR073306	Third green 1	96.394
	CRR073307	Third green 2	104.298
	CRR073308	Third green 3	81.725
	CRR073309	Second white 1	41.454
	CRR073310	Second white 2	34.396
	CRR073311	Second white 3	40.620
	CRR073312	Silver flowering 1	75.303
	CRR073313	Silver flowering 2	88.083
	CRR073314	Silver flowering 3	66.532
	CRR073315	Gold flowering 1	40.400
	CRR073316	Gold flowering 2	59.499
	CRR073317	Gold flowering 3	44.570
	CRR073318	Tawny withering 1	112.903
	CRR073319	Tawny withering 2	127.032
	CRR073320	Tawny withering 3	121.479