Gene detail

Detail information of GWHGAAZE022808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010044737.1	7.2014E-161	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Eucalyptus grandis]
COG	YP_169036.1	3E-12	sterol desaturase family protein
Swissprot	tr\|Q9AST3\|SBH2_ARATH	5E-148	Sphinganine C(4)-monooxygenase 2
trEMBL	tr\|A0A059D8M5\|A0A059D8M5_EUCGR	3E-161	Uncharacterized protein {ECO:0000313\|EMBL:KCW86839.1}
TAIR10	AT1G69640.1	3E-112	sphingoid base hydroxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78873945	78877382	-
GWHAAZE00000006	mRNA	78873945	78877382	-
GWHAAZE00000006	exon	78873945	78874496	-
GWHAAZE00000006	exon	78877161	78877382	-
GWHAAZE00000006	CDS	78877161	78877382	-
GWHAAZE00000006	CDS	78873945	78874496	-

Transcript Sequence
>GWHTAAZE022838 ATGGAATTTGGGGTATCGGATGAGTTGTTGGGGACTGTGATGCCGATCGTGGTTTATTGGGTGTATTCGGGGATTTATACGATGTTTGGATCCTTTGATCAATATCGGTTGCATTCGAAGAAGGACGAAGATGATAGGAATTTGGTGTCAAAGGGGGACGTTGTTAAAGGTGTTCTTCTCCAACAAGCTGTTCAGGCTGTCGTTGCAATTATTCTCTTCACGGTTACCGGAAATGATACTGACGACAACATAGGTCGACGATCTTCCCTTGTTCTTGTGAGACAATTTGTTACGGCAATGGTGGTCTTAGATAGTTGGCAATATTTCATGCACCGGTACATGCACCATAACAAGTTCTTGTACAAGCATATCCATTCTCAACATCACCGCCTTGTTGTACCCTATGCATTTGGAGCTCTTTACAACCACCCATTTGAGGGCCTTATTTTAGACACAATTGGCGGAGCTTTATCTTTTCTCTTATCAGGCATGTCCCCTAGAGCTTCCATTTTCTTCTTCTCTTTTGCAACTATTAAAACAGTGGACGATCATTGTGGATTGTGGCTACCCGGTAACCTTTTCCATGTATTTTTCAAAAACAACTCCGCCTATCATGATATTCACCACCAGCTTTATGGAAACAAATATAACTTTTCACAGCCGTTCTTTGTTATGTGGGATAGAATACTTGGTACGTACATGCCTTACTCAATCGAGAAGAGAGCGGGTGGGGGCCTTGAAGCAAGACCTACTAATGATTGCAAGGATAATTGA

Network for GWHGAAZE022808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	96	232	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04713	SUR2	Metabolic pathways	map01100
K04713	SUR2	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.929
	SRR3591706	second leaf	15.216
	SRR3591707	mature leaf	34.860
	SRR3591708	Shoot apex	21.809
	SRR3591709	Stem	54.670
	SRR3591710	White floral bud	85.416
	SRR3591711	White flower	96.581
	SRR3591712	Green floral bud	54.708
	SRR3591713	Yellow flower	108.515
SRP173429	SRR8316895	Juvenile bud stage	14.737
	SRR8316896	Juvenile bud stage	22.327
	SRR8316897	Juvenile bud stage	10.882
	SRR8316894	Third green stage	8.336
	SRR8316900	Third green stage	35.053
	SRR8316901	Third green stage	28.555
	SRR8316898	Complete white stage	23.196
	SRR8316899	Complete white stage	73.646
	SRR8316903	Complete white stage	30.346
	SRR8316902	Silver flowering stage	28.036
	SRR8316904	Silver flowering stage	39.832
	SRR8316905	Silver flowering stage	20.530
	SRR8316906	Gold flowering stage	58.487
	SRR8316907	Gold flowering stage	40.496
	SRR8316908	Gold flowering stage	71.157
SRP132670	SRR6706286	Control	8.542
	SRR6706287	Light intensity 50%	10.977
	SRR6706288	Light intensity 20%	11.315
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.482
	CNS0095593	Slightly white alabastrum(diploid) 2	17.164
	CNS0095594	Slightly white alabastrum(diploid) 3	18.972
	CNS0095595	Whole white alabastrum(diploid) 2	32.592
	CNS0095596	Whole white alabastrum(diploid) 3	31.552
	CNS0095597	Whole white alabastrum(diploid) 4	39.135
	CNS0095598	Silvery flower (diploied) 1	22.822
	CNS0095599	Silvery flower (diploied) 2	21.642
	CNS0095600	Silvery flower (diploied) 3	58.896
	CNS0095601	Golden flower (diploid) 1	23.359
	CNS0095602	Golden flower (diploid) 2	62.961
	CNS0095603	Golden flower (diploid) 3	55.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.790
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.701
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.734
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.798
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.653
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.489
	CNS0095610	Silvery flower (tetraploid) 1	50.554
	CNS0095611	Silvery flower (tetraploid) 2	58.449
	CNS0095612	Silvery flower (tetraploid) 3	49.577
	CNS0095613	Golden flower (tetraploid) 1	30.125
	CNS0095614	Golden flower (tetraploid) 2	54.122
	CNS0095615	Golden flower (tetraploid) 3	75.733
CRA001975	CRR073297	Stem 1	21.369
	CRR073298	Stem 2	18.858
	CRR073299	Stem 3	18.302
	CRR073300	Leaf 1	23.191
	CRR073301	Leaf 2	17.140
	CRR073302	Leaf 3	23.741
	CRR073303	Juvenile bud 1	23.870
	CRR073304	Juvenile bud 2	23.023
	CRR073305	Juvenile bud 3	23.891
	CRR073306	Third green 1	19.036
	CRR073307	Third green 2	21.633
	CRR073308	Third green 3	15.722
	CRR073309	Second white 1	33.036
	CRR073310	Second white 2	22.177
	CRR073311	Second white 3	22.697
	CRR073312	Silver flowering 1	36.529
	CRR073313	Silver flowering 2	53.191
	CRR073314	Silver flowering 3	38.222
	CRR073315	Gold flowering 1	18.955
	CRR073316	Gold flowering 2	22.392
	CRR073317	Gold flowering 3	18.316
	CRR073318	Tawny withering 1	33.660
	CRR073319	Tawny withering 2	34.488
	CRR073320	Tawny withering 3	31.442