Gene detail

Detail information of GWHGAAZE022820

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652303.1	0	PREDICTED: uncharacterized protein LOC100246639 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	3E-20	Myb-related protein 3R-1
trEMBL	tr\|D7TNB9\|D7TNB9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31992.3}
TAIR10	AT1G14350.2	4E-121	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79256035	79260154	+
GWHAAZE00000006	mRNA	79256035	79260154	+
GWHAAZE00000006	exon	79256035	79256127	+
GWHAAZE00000006	exon	79256219	79256265	+
GWHAAZE00000006	exon	79256391	79256447	+
GWHAAZE00000006	exon	79256561	79256633	+
GWHAAZE00000006	exon	79256840	79256895	+
GWHAAZE00000006	exon	79256990	79257163	+
GWHAAZE00000006	exon	79257252	79257433	+
GWHAAZE00000006	exon	79257673	79257851	+
GWHAAZE00000006	exon	79258048	79258190	+
GWHAAZE00000006	exon	79258272	79258483	+
GWHAAZE00000006	exon	79258600	79258745	+
GWHAAZE00000006	exon	79259628	79259789	+
GWHAAZE00000006	exon	79260044	79260154	+
GWHAAZE00000006	CDS	79256035	79256127	+
GWHAAZE00000006	CDS	79256219	79256265	+
GWHAAZE00000006	CDS	79256391	79256447	+
GWHAAZE00000006	CDS	79256561	79256633	+
GWHAAZE00000006	CDS	79256840	79256895	+
GWHAAZE00000006	CDS	79256990	79257163	+
GWHAAZE00000006	CDS	79257252	79257433	+
GWHAAZE00000006	CDS	79257673	79257851	+
GWHAAZE00000006	CDS	79258048	79258190	+
GWHAAZE00000006	CDS	79258272	79258483	+
GWHAAZE00000006	CDS	79258600	79258745	+
GWHAAZE00000006	CDS	79259628	79259789	+
GWHAAZE00000006	CDS	79260044	79260154	+

Transcript Sequence
>GWHTAAZE022850 ATGAAGAAAGCAAGTAACAATTGCAATAGCAGTAATAGTAATACTGAAGTTCCCAAGCAGAAAGAGCGGCATATTGTGACGTGGTCACAAGAGGAGGACGATGTACTACGCGAACAAATTCGCATTCATGGAACCGACAATTGGGCTATCATTGCTTCCAGATTCAAAGACAAAACCACAAGACAATGCAGAAGGAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGGGGATGGTCACCAGAGGAAGACATGCTACTGTGTGAGGCTCAGAAGATCTTTGGCAACAGGTGGACTGAAATAGCAAAAGTAGTTTCAGGCAGAACGGATAATGCTGTGAAGAATCGGTTTTCCACATTATGTAAGAAGAAAGCAAAGCGTGAAGCCTTAGCAAAAGAGAACAACACATCTTATGTCAACCTAAACAACAAAAGGGTCATATTTCAAAATGGGCTTGACGTTGATGGAATAGAAACTGTAGTTCCTCTTAAGAGAAGGAGGAGTCACATTCCCGAAATAGCGGAAAATTGCAATCAGGGAGAAAGGTTACTAGGGGAATGTGGAACAACAAATCAGCTGCTAAGACCTCCATTTGCTGTACTTGTCCAAAACTTCCATAATGTTAGCGACTTGCCAACTGAACGTCATGCCAACACCACCAAGGACGCCTCCTGTGATGTTAAAGTAGTTTCCTTCTTGGATCCAAAAGCAGTCAGTAGTAGCATGATTCAAGGAACGTATCTCAAGAAGGATGATCCAAAGATTATTGCATTGATGCAACAAGCAGAACTGCTCAGCTCGCTTGCGCTTAAAGTTAATACGGAGAACACAGACCAGAGTCTTGAAAATGCTTGGAAGGTTCTCCAAGATTTTCTCAATCAAAGCAAAGAAAGTGATGTTCTCGGATTTAAAATATCTGAAATAGATTTCCAACTTGAGAGTTTCAAAGACTTGGTAGATGATTTAAGGAGTGGTAATGAAGGAAGTCGACCATCATACAGGCAGCCTGGATTATATGAGGAGTCACCAGACAGCTCCGAGTATAGTACTGGATCAACTCTCCTATCCCATAGAAGAAGTGATAAAACAGAACAGAATCAAGCTGAGGTCTGTGCACTGCATGAGGATATTGAAGCTGAATTGCAATCACCTAATATAGGAGAGCATGGTCTTGGGGAAAATGATATTCTCTCTGGTGGAGCCACAACTCAAGATGTCTTGCCAACTTGTGGTGAGTTAAAAACCGATGGAGGAGCTATTTGCTCATTGTCAAGTACAGAGTTCAGTTCCCCATTTCAAGTAACTCCATTGTTTAGATCATTGGCAGCAGGGATTCCCAGCCCACAATTTTCTGAAAGTTCCTCCAATAGCATAATGATTTACATCTCAGATGAACCATCACGAGGAGCCAGTGGGGCATGGTTCAGGCAGATCCTTACTCCAGCCTCTAAAAGCATCAGCATCTTGATGTTATATGCATCAGGGAACAAGAAGCCTGCATATCTGATGCTATATGAGGTCGAGAGGCATTTCCTACTAAAAACACTTGGAATGGAGTCCACATCCCCAGATCCAAACACCAAAACTTCACAACCTCCACCCTGCAAAAGGATACTTCTCCATAGTTTATGA

Network for GWHGAAZE022820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	28	88	6.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.109
	SRR3591706	second leaf	6.999
	SRR3591707	mature leaf	1.325
	SRR3591708	Shoot apex	20.773
	SRR3591709	Stem	15.503
	SRR3591710	White floral bud	4.216
	SRR3591711	White flower	2.806
	SRR3591712	Green floral bud	11.053
	SRR3591713	Yellow flower	3.634
SRP173429	SRR8316895	Juvenile bud stage	5.475
	SRR8316896	Juvenile bud stage	4.618
	SRR8316897	Juvenile bud stage	4.014
	SRR8316894	Third green stage	2.379
	SRR8316900	Third green stage	3.055
	SRR8316901	Third green stage	3.802
	SRR8316898	Complete white stage	1.285
	SRR8316899	Complete white stage	7.736
	SRR8316903	Complete white stage	2.537
	SRR8316902	Silver flowering stage	0.431
	SRR8316904	Silver flowering stage	0.369
	SRR8316905	Silver flowering stage	0.200
	SRR8316906	Gold flowering stage	0.807
	SRR8316907	Gold flowering stage	0.481
	SRR8316908	Gold flowering stage	3.424
SRP132670	SRR6706286	Control	1.918
	SRR6706287	Light intensity 50%	1.889
	SRR6706288	Light intensity 20%	2.467
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.097
	CNS0095593	Slightly white alabastrum(diploid) 2	2.722
	CNS0095594	Slightly white alabastrum(diploid) 3	1.520
	CNS0095595	Whole white alabastrum(diploid) 2	1.690
	CNS0095596	Whole white alabastrum(diploid) 3	1.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.961
	CNS0095598	Silvery flower (diploied) 1	1.206
	CNS0095599	Silvery flower (diploied) 2	0.863
	CNS0095600	Silvery flower (diploied) 3	1.579
	CNS0095601	Golden flower (diploid) 1	1.767
	CNS0095602	Golden flower (diploid) 2	1.190
	CNS0095603	Golden flower (diploid) 3	1.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.685
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.464
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.052
	CNS0095610	Silvery flower (tetraploid) 1	0.987
	CNS0095611	Silvery flower (tetraploid) 2	1.202
	CNS0095612	Silvery flower (tetraploid) 3	0.564
	CNS0095613	Golden flower (tetraploid) 1	0.694
	CNS0095614	Golden flower (tetraploid) 2	0.941
	CNS0095615	Golden flower (tetraploid) 3	1.341
CRA001975	CRR073297	Stem 1	10.185
	CRR073298	Stem 2	7.920
	CRR073299	Stem 3	8.385
	CRR073300	Leaf 1	6.802
	CRR073301	Leaf 2	5.142
	CRR073302	Leaf 3	3.802
	CRR073303	Juvenile bud 1	7.037
	CRR073304	Juvenile bud 2	2.345
	CRR073305	Juvenile bud 3	6.476
	CRR073306	Third green 1	0.421
	CRR073307	Third green 2	0.842
	CRR073308	Third green 3	1.267
	CRR073309	Second white 1	0.097
	CRR073310	Second white 2	0.057
	CRR073311	Second white 3	0.219
	CRR073312	Silver flowering 1	0.308
	CRR073313	Silver flowering 2	0.131
	CRR073314	Silver flowering 3	0.279
	CRR073315	Gold flowering 1	0.175
	CRR073316	Gold flowering 2	0.712
	CRR073317	Gold flowering 3	0.615
	CRR073318	Tawny withering 1	15.685
	CRR073319	Tawny withering 2	11.614
	CRR073320	Tawny withering 3	17.403