Detail information of GWHGAAZE022821


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007046182.10UDP-galactose transporter 3 isoform 2 [Theobroma cacao]
Swissprottr|Q9M9S6|UTR3_ARATH0UDP-galactose/UDP-glucose transporter 3
trEMBLtr|A0A061EI79|A0A061EI79_THECC0UDP-galactose transporter 3 isoform 2 {ECO:0000313|EMBL:EOY02014.1}
TAIR10AT1G14360.18E-152UDP-galactose transporter 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7926353479266546-
GWHAAZE00000006mRNA7926353479266546-
GWHAAZE00000006exon7926353479263942-
GWHAAZE00000006exon7926446979264590-
GWHAAZE00000006exon7926467479264777-
GWHAAZE00000006exon7926494079264970-
GWHAAZE00000006exon7926569279265855-
GWHAAZE00000006exon7926598079266077-
GWHAAZE00000006exon7926644379266546-
GWHAAZE00000006CDS7926644379266546-
GWHAAZE00000006CDS7926598079266077-
GWHAAZE00000006CDS7926569279265855-
GWHAAZE00000006CDS7926494079264970-
GWHAAZE00000006CDS7926467479264777-
GWHAAZE00000006CDS7926446979264590-
GWHAAZE00000006CDS7926353479263942-
Transcript Sequence

Network for GWHGAAZE022821

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0056


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08449.12UAA153281.00E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf88.269
SRR3591706second leaf54.756
SRR3591707mature leaf45.609
SRR3591708Shoot apex55.177
SRR3591709Stem46.673
SRR3591710White floral bud68.644
SRR3591711White flower53.590
SRR3591712Green floral bud90.718
SRR3591713Yellow flower216.110
SRP173429 SRR8316895Juvenile bud stage 48.917
SRR8316896Juvenile bud stage 62.956
SRR8316897Juvenile bud stage 35.154
SRR8316894Third green stage 29.760
SRR8316900Third green stage 118.899
SRR8316901Third green stage 102.662
SRR8316898Complete white stage 44.064
SRR8316899Complete white stage 70.876
SRR8316903Complete white stage 50.033
SRR8316902Silver flowering stage42.374
SRR8316904Silver flowering stage62.091
SRR8316905Silver flowering stage30.137
SRR8316906Gold flowering stage 101.582
SRR8316907Gold flowering stage 111.187
SRR8316908Gold flowering stage 78.034
SRP132670SRR6706286Control47.846
SRR6706287Light intensity 50%47.697
SRR6706288Light intensity 20%46.737
CNP0000432CNS0095592Slightly white alabastrum(diploid) 184.803
CNS0095593Slightly white alabastrum(diploid) 287.948
CNS0095594Slightly white alabastrum(diploid) 387.997
CNS0095595Whole white alabastrum(diploid) 285.297
CNS0095596Whole white alabastrum(diploid) 398.512
CNS0095597Whole white alabastrum(diploid) 470.642
CNS0095598Silvery flower (diploied) 182.693
CNS0095599Silvery flower (diploied) 257.312
CNS0095600Silvery flower (diploied) 368.070
CNS0095601Golden flower (diploid) 152.111
CNS0095602Golden flower (diploid) 2194.561
CNS0095603Golden flower (diploid) 3185.962
CNS0095604Slightly white alabastrum(tetraploid) 181.626
CNS0095605Slightly white alabastrum(tetraploid) 283.136
CNS0095606Slightly white alabastrum(tetraploid) 397.424
CNS0095607Whole white alabastrum(tetraploid) 192.893
CNS0095608Whole white alabastrum(tetraploid) 265.759
CNS0095609Whole white alabastrum(tetraploid) 3143.237
CNS0095610Silvery flower (tetraploid) 179.203
CNS0095611Silvery flower (tetraploid) 242.388
CNS0095612Silvery flower (tetraploid) 343.867
CNS0095613Golden flower (tetraploid) 154.038
CNS0095614Golden flower (tetraploid) 273.401
CNS0095615Golden flower (tetraploid) 3132.157
CRA001975CRR073297Stem 140.706
CRR073298Stem 239.827
CRR073299Stem 340.517
CRR073300Leaf 151.183
CRR073301Leaf 254.672
CRR073302Leaf 352.882
CRR073303Juvenile bud 148.398
CRR073304Juvenile bud 249.090
CRR073305Juvenile bud 346.034
CRR073306Third green 124.605
CRR073307Third green 227.997
CRR073308Third green 333.215
CRR073309Second white 156.476
CRR073310Second white 233.422
CRR073311Second white 335.341
CRR073312Silver flowering 1171.113
CRR073313Silver flowering 2317.102
CRR073314Silver flowering 3254.272
CRR073315Gold flowering 122.488
CRR073316Gold flowering 224.119
CRR073317Gold flowering 331.190
CRR073318Tawny withering 145.428
CRR073319Tawny withering 238.752
CRR073320Tawny withering 339.669