Gene detail

Detail information of GWHGAAZE022823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086383.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 [Sesamum indicum]
COG	YP_001192956.1	4E-17	two component regulator
Swissprot	tr\|Q9M9S4\|Y1143_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (Precursor)
trEMBL	tr\|A0A022QJ16\|A0A022QJ16_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU28717.1}
TAIR10	AT1G14390.1	9E-162	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79301749	79304714	+
GWHAAZE00000006	mRNA	79301749	79304714	+
GWHAAZE00000006	exon	79301749	79302976	+
GWHAAZE00000006	exon	79303131	79303267	+
GWHAAZE00000006	exon	79303484	79303730	+
GWHAAZE00000006	exon	79303804	79303997	+
GWHAAZE00000006	exon	79304101	79304153	+
GWHAAZE00000006	exon	79304236	79304347	+
GWHAAZE00000006	exon	79304463	79304714	+
GWHAAZE00000006	CDS	79301749	79302976	+
GWHAAZE00000006	CDS	79303131	79303267	+
GWHAAZE00000006	CDS	79303484	79303730	+
GWHAAZE00000006	CDS	79303804	79303997	+
GWHAAZE00000006	CDS	79304101	79304153	+
GWHAAZE00000006	CDS	79304236	79304347	+
GWHAAZE00000006	CDS	79304463	79304714	+

Transcript Sequence
>GWHTAAZE022853 ATGGAAAAATATTCTCGGGTTTCATTCCTTTTCTCGTTTCTTGTTTTCCTTTCCCCCCTTTCTTTTCCACCTTGTCTTTCACAATTATCTCCGGCCGAAAACAGAATCCTTTTCCAAGTCCAAGAATTTCTGGAATACCCAGAAGCCCTTCAACAATGGAATAATTGGACTAATTTCTGTTATCTTCCTCCATCTCAATTTATTACTATTGTCTGTTCGGATAATCACATAACCGAATTAACTGTCGTTGGAAACAAATCCTCTCCTTCAGGGAACTTCACTGTTTCCCCCAGAACCCTCTCTGCAAAATTCTCCATTGATTCATTCTTCACCCTTTTAACAAAGCTTTCAAATTTGAAAGTTCTTTCACTTGTTTCGCTAGGCTTGTGGGGTCCATTACCGGATAAAATCAACCGGCTTTCATCACTAGAAGCACTCAATATGAGTTCAAATTTCATCTATGGAGAAATCCCTTCATCAATAGCCACTTTTTCGAGTCTCAAAAGCCTTGTTTTGAATGATAATTTGTTCAATGGGAGTGTTCCAGATCTCAGAGGATTACAAGTTCTTGAAGAACTGAATTTGGGTAATAATCACCTGGGGTCTAAATTTCCTTCATTGGCTAACAATCTTGTTAGTATCATATTGAGAAACAATTCCCTCAGATTCGAAATCCCTTCAGCATTAGCAAGCTTTGATCGACTCGAAACACTCGATGTCTCAACCAATAAACTTGGCGGACCGATCCCTTCTTCCCTGTTTTCTCTGCCATCAATTCAATACCTCAATCTAGCCAGAAATCAGTTCAGTGGGGCCCTTTCGGCGAATGTGACTTGCAATCCCAGGCTTGGCTTTGTGGATATTTCAAATAATCTTTTGATGGGGAAGTTGCCTACTTGCATTGGATCAAATCCCACAAATCGTACTGTTATTAGCTTGTGGAATTGTCTATCCAATACTAGCTCGAAATATCAGCACCCTTACAAGTTCTGCCACAAAGAAGCACTAGCTGTTAAGCCTCCAAGTATAAGACAATCAAAGCAGTCCACTGTGAAACTTGGTTTTGTTATTGCTATTATTGGGGGCATCGTCGGAGTTGGTGCCGCAATTGGGGTATTGTTCTTTGTTATTTACAGACGAAAGGAAGCAAATAAGGCTAAAGAATTCAAATGCGACAGCTTTGTTTTCGACAAAAAATCTGTTCTTGGCTCGCCGATTATTGATGGAAGGCATAGACCACAAACAATGAGGAGGATGGCAACATTTGGTCTTCTCCCATATCATACTTTCACACTAGAGGAAATGGAAGATGCAACAAACAATTTTGACCCATCAAATTTGGTGCAGGAAGGATCTCAGGGACAGCTCTACAAAGGTTGGCTTAGGGACGGGTCAACAGTGCTGGTGAAATGTTTGAAAATAAAACAGAAGCATACACATTTAACCTTGCAGCAGCATATGGAAGTAATATCAAAGCTGAGGCACCGACACTTGGTCAGCGTTCTGGGTCACTGCATTGTGACATACCTCGATCATCCTCCCAATACTGCCAGCACTGTCTTCATCGTTCTTGAATACATTACAAACGGGTCATTGAGGGATCATCTTACAGATTGGAGAAAGAGGGAACTACTGAAATGGCCGCAGAGAATGGGAATCACAATGGGTATTGCGAGAGGAATTCAATTCTTGCATAATGGAATTGCACCCGGGATTTATGGAAATGATTTAAAGATTGAGAACATATTGTTGGACGAGAGTCTCACTCCAAAAATTAGTAGTTACAACATATCTTTGCCATCTAAGGTTGGTTCAGAAAGTCCTCTCCACAGACAAGACACCCCTAATCATCTCACCGGAAGTGAAAATGCGGAGAAAGATGATATTTTTCAACTGGGAGTTATTCTACTTGAAGTTATTTCTGGTAGAGCAGTAAAAACCAAGAGTGAATTAGAAGATCTGAAGCATCAGATGGAAATGAGCTTAGCAGAAACACCAAAAAAGCTAAGAGAGGTGACAGATCCATCAATTAGGGGAACTTTTGCGTACGATTCGTTGAAGACTGCGGTTCAGATCACAATGAATTGCCTATGCAAAGAAGCAAGCAAGAGGCCATCGATAGAAGATGTACTTTGGCACATGCAGTATTCGAGTCAAGTTCAAGAAGGGTGGACTAGTGCTAGCGGAAATCTTAGCGGAAACCTTAGTGGAAGGATGAACTAA

Network for GWHGAAZE022823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	210	269	4.80E-07
PF00069.26	Pkinase	450	713	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.973
	SRR3591706	second leaf	14.376
	SRR3591707	mature leaf	7.090
	SRR3591708	Shoot apex	20.439
	SRR3591709	Stem	13.741
	SRR3591710	White floral bud	16.650
	SRR3591711	White flower	7.592
	SRR3591712	Green floral bud	17.112
	SRR3591713	Yellow flower	1.680
SRP173429	SRR8316895	Juvenile bud stage	25.886
	SRR8316896	Juvenile bud stage	25.511
	SRR8316897	Juvenile bud stage	23.914
	SRR8316894	Third green stage	6.363
	SRR8316900	Third green stage	10.315
	SRR8316901	Third green stage	12.366
	SRR8316898	Complete white stage	3.566
	SRR8316899	Complete white stage	22.621
	SRR8316903	Complete white stage	7.407
	SRR8316902	Silver flowering stage	0.744
	SRR8316904	Silver flowering stage	1.203
	SRR8316905	Silver flowering stage	0.586
	SRR8316906	Gold flowering stage	0.947
	SRR8316907	Gold flowering stage	0.666
	SRR8316908	Gold flowering stage	2.169
SRP132670	SRR6706286	Control	4.482
	SRR6706287	Light intensity 50%	4.930
	SRR6706288	Light intensity 20%	5.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.677
	CNS0095593	Slightly white alabastrum(diploid) 2	10.266
	CNS0095594	Slightly white alabastrum(diploid) 3	8.392
	CNS0095595	Whole white alabastrum(diploid) 2	7.398
	CNS0095596	Whole white alabastrum(diploid) 3	4.187
	CNS0095597	Whole white alabastrum(diploid) 4	6.830
	CNS0095598	Silvery flower (diploied) 1	20.566
	CNS0095599	Silvery flower (diploied) 2	34.343
	CNS0095600	Silvery flower (diploied) 3	12.174
	CNS0095601	Golden flower (diploid) 1	19.999
	CNS0095602	Golden flower (diploid) 2	17.525
	CNS0095603	Golden flower (diploid) 3	15.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.974
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.762
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.586
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.596
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.113
	CNS0095610	Silvery flower (tetraploid) 1	2.538
	CNS0095611	Silvery flower (tetraploid) 2	4.385
	CNS0095612	Silvery flower (tetraploid) 3	5.476
	CNS0095613	Golden flower (tetraploid) 1	0.797
	CNS0095614	Golden flower (tetraploid) 2	1.867
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	9.940
	CRR073298	Stem 2	9.796
	CRR073299	Stem 3	11.318
	CRR073300	Leaf 1	11.160
	CRR073301	Leaf 2	11.468
	CRR073302	Leaf 3	6.122
	CRR073303	Juvenile bud 1	6.937
	CRR073304	Juvenile bud 2	7.427
	CRR073305	Juvenile bud 3	12.138
	CRR073306	Third green 1	1.507
	CRR073307	Third green 2	0.830
	CRR073308	Third green 3	1.813
	CRR073309	Second white 1	0.229
	CRR073310	Second white 2	0.462
	CRR073311	Second white 3	0.214
	CRR073312	Silver flowering 1	0.767
	CRR073313	Silver flowering 2	0.218
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	4.133
	CRR073316	Gold flowering 2	7.176
	CRR073317	Gold flowering 3	4.497
	CRR073318	Tawny withering 1	10.276
	CRR073319	Tawny withering 2	7.504
	CRR073320	Tawny withering 3	11.407