Gene detail

Detail information of GWHGAAZE022824

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010242382.1	1.0585E-144	PREDICTED: probable WRKY transcription factor 72 [Nelumbo nucifera]
Swissprot	tr\|Q9LXG8\|WRK72_ARATH	1E-74	Probable WRKY transcription factor 72
trEMBL	tr\|D7TND6\|D7TND6_VITVI	2E-144	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32009.3}
TAIR10	AT5G15130.1	2E-55	WRKY DNA-binding protein 72

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79315837	79320951	-
GWHAAZE00000006	mRNA	79315837	79320951	-
GWHAAZE00000006	exon	79315837	79316625	-
GWHAAZE00000006	exon	79316733	79316846	-
GWHAAZE00000006	exon	79316975	79317502	-
GWHAAZE00000006	exon	79317613	79317690	-
GWHAAZE00000006	exon	79320426	79320515	-
GWHAAZE00000006	exon	79320862	79320951	-
GWHAAZE00000006	CDS	79320862	79320951	-
GWHAAZE00000006	CDS	79320426	79320515	-
GWHAAZE00000006	CDS	79317613	79317690	-
GWHAAZE00000006	CDS	79316975	79317502	-
GWHAAZE00000006	CDS	79316733	79316846	-
GWHAAZE00000006	CDS	79315837	79316625	-

Transcript Sequence
>GWHTAAZE022854 ATGGAGTCTGCTGCTGCTTCAGAAAAATCTTTGATTGGGTTTAAGATTAAGGAACAGAAGAAGCCTATGAAATCTAATGGCGACGACGAGGTAGCACATGCTAGAGATGTGCACAAGGAGGGCAACAGTTCAGTTCCGTCATCACCTAATGGAAAAGATATAGCTGTTGATACAAAACAGGTCTCATCAATAACCACCACAGAAAGAGCATCCATGGAAATTGATCAAAGATGCTCCTCCTCAGTCCATGATAATCAGGATGATCAGCTCAAATCTGCTAAAGCTGAAATGGGCGAAGTTAGAGAAGAAAATGAAAAGCTGAAACTGATGTTATCGAAAATCATGAAAGATTACCACTCTCTTCAGACCCATTTCGATAAAATTGTTCAACAAGATGTATCCAATAAATCAGTAGATCCAACTGAGTACAAAAAAGTTGTTGAAGAAGAACCTGAACTTATTTCTCTTAGCCTTGGAAGATTTTCAAGCGAGGAGCTGAAAAAGAAGGAGATTGAGTACTTAAACAATGGGGAAGATGATGCCAATATTGGTAAATTTGATCATGATCATCAAGGACTTGCATTGGGGCTAGATAGTAGATTTTATCAAAGTTCAATGAAGAACAATAACAATGGGAGCCCTCGAAGTAGCTTGAATGAGTCGAATGAAGAAGGCACTACTAGTAAAAGTGTAAAGACAGGGAGGAGCGGGGAAGATGAAATTTTACAGCAGACCCCTTTGAAGAAAGCTAGGGTTTCTGTAAGAGCTACTTGCAATACTGCAACGATGAATGATGGATGCCAATGGAGGAAATACGGACAAAAGATAGCGAAAGGAAATCCGTGCCCGCGAGCATACTACCGTTGCACTGTCTCTTCATCTTGCCCAGTTAGAAAACACGTTCAAAGATGTGCAGAGGACATGTCGATTTTAATCACAACATATGAAGGAACCCACAACCACCCACTTCCAGTATCAGCAACAGCGATGGCATCCACCACTTCTGCCGCTGCGTCAATGCTAAAATCCGCTTCATCAACCTCTCAACCCGGCCTTGGAAACACTCCCACCAGCACCACTTCCGCAAACCTCCACGGCCTAAACTTCACCCATCCAGCATCAACACCACTCTGCCACCCATTCTACTTCCCAAACACTTCCATCTCAACTACTCAATCTCACCCAACTGTCACCCTAGACCTCACAGCCCCAGCCACCTCTTCCCATTTCAACAGATCATCATCATCGTCCTTATTTTCTTCCCAGAAGTATTTACCAACATGTCTTGATTTCTCTTCATCATCCTCCAACAACAGAAACAATATCAGTTCTTCGTATTTTAATACCCAACAAATTCAAGAACAATCTTATCAACCTTACACAATTGAAGCTGCGACAAAGGAAATTACATCAAACCCGAAATTTCGATCAGCATTAGCAGCCGCAATTACTTCATTTGTGGGGAATGCACGAGAAAATAATAATGGTGCTGGGGAGAGCTCTGCATTTCTTGGTCATTCTTCTGCTATTCATAATGGGATTGGATGTGCAACTAGCTATCTGAATAGATTGCCTGCTGTTTCAAATTCTCAGCAGGGGAACTTAACTTTGTTCCCATCTTTGTTGCCATTATCTGCATCTAAAATCCCTTCTATCTCTCCTGTTGATGAGGGTGATCATATCAAGTAA

Network for GWHGAAZE022824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0234

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	264	322	9.40E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.060
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.079
	SRR3591711	White flower	0.108
	SRR3591712	Green floral bud	0.456
	SRR3591713	Yellow flower	0.221
SRP173429	SRR8316895	Juvenile bud stage	0.313
	SRR8316896	Juvenile bud stage	4.688
	SRR8316897	Juvenile bud stage	0.684
	SRR8316894	Third green stage	1.380
	SRR8316900	Third green stage	0.827
	SRR8316901	Third green stage	1.577
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.061
	SRR8316903	Complete white stage	0.054
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.020
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.176
	SRR8316907	Gold flowering stage	0.401
	SRR8316908	Gold flowering stage	0.205
SRP132670	SRR6706286	Control	0.460
	SRR6706287	Light intensity 50%	0.244
	SRR6706288	Light intensity 20%	0.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.365
	CNS0095593	Slightly white alabastrum(diploid) 2	0.749
	CNS0095594	Slightly white alabastrum(diploid) 3	2.303
	CNS0095595	Whole white alabastrum(diploid) 2	0.890
	CNS0095596	Whole white alabastrum(diploid) 3	0.620
	CNS0095597	Whole white alabastrum(diploid) 4	0.838
	CNS0095598	Silvery flower (diploied) 1	0.200
	CNS0095599	Silvery flower (diploied) 2	0.534
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.040
	CNS0095602	Golden flower (diploid) 2	0.172
	CNS0095603	Golden flower (diploid) 3	0.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.078
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.555
	CNS0095610	Silvery flower (tetraploid) 1	0.103
	CNS0095611	Silvery flower (tetraploid) 2	0.227
	CNS0095612	Silvery flower (tetraploid) 3	0.318
	CNS0095613	Golden flower (tetraploid) 1	0.196
	CNS0095614	Golden flower (tetraploid) 2	0.110
	CNS0095615	Golden flower (tetraploid) 3	0.243
CRA001975	CRR073297	Stem 1	0.806
	CRR073298	Stem 2	1.034
	CRR073299	Stem 3	0.806
	CRR073300	Leaf 1	0.377
	CRR073301	Leaf 2	0.519
	CRR073302	Leaf 3	0.269
	CRR073303	Juvenile bud 1	0.051
	CRR073304	Juvenile bud 2	0.044
	CRR073305	Juvenile bud 3	0.047
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.070
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.609
	CRR073319	Tawny withering 2	0.341
	CRR073320	Tawny withering 3	0.099