Gene detail

Detail information of GWHGAAZE022825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009599234.1	1.08851E-98	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LL85\|WHY1_SOLTU	5E-97	Single-stranded DNA-binding protein WHY1, chloroplastic (Precursor)
trEMBL	tr\|A0A068TVJ0\|A0A068TVJ0_COFCA	1E-98	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00295.1}
TAIR10	AT1G14410.1	2E-75	ssDNA-binding transcriptional regulator

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79329191	79332393	-
GWHAAZE00000006	mRNA	79329191	79332393	-
GWHAAZE00000006	exon	79332132	79332393	-
GWHAAZE00000006	exon	79331924	79332024	-
GWHAAZE00000006	exon	79331444	79331536	-
GWHAAZE00000006	exon	79330968	79331062	-
GWHAAZE00000006	exon	79330336	79330409	-
GWHAAZE00000006	exon	79330121	79330209	-
GWHAAZE00000006	exon	79329870	79329958	-
GWHAAZE00000006	exon	79329756	79329799	-
GWHAAZE00000006	exon	79329191	79329288	-
GWHAAZE00000006	five_prime_UTR	79332364	79332393	-
GWHAAZE00000006	CDS	79332132	79332363	-
GWHAAZE00000006	CDS	79331924	79332024	-
GWHAAZE00000006	CDS	79331444	79331536	-
GWHAAZE00000006	CDS	79330968	79331062	-
GWHAAZE00000006	CDS	79330336	79330409	-
GWHAAZE00000006	CDS	79330121	79330209	-
GWHAAZE00000006	CDS	79329870	79329958	-
GWHAAZE00000006	CDS	79329756	79329799	-
GWHAAZE00000006	CDS	79329191	79329288	-

Transcript Sequence
>GWHTAAZE022855 ACACAGAAACCGCCCTCAAGAAGAGGAAGAATGCTAAACCTCTACGCATCTTTGTCCACAGCCACAGGGTTGTTCAGCTCACAAAACCCTAATAAACTATGCCCTCTTCACCACTCTCACAACTCCCTCTTCACTACCAACACCAAATTCAATCCCAAAACCTCTTCCCTCTCTTTTACCAAAACCCTACCCTCAAAGCTTATTTTGAAATTCCGCCAATCCGGGGATTATTACGATAAGAGTTTCTCCCCTCACCAACCAACCAAGGGGTTACCGCCTAGGGTTTTCGTTGGACACTCCATTTACAAAGGGAAGGCTGCTCTTGCGGTGGAGCCTCGCCCTCCCGAGTTTTCTCCCATCGGGCCAGGGACTTTTAAGCTAGTAAAAGAGGGTTGTGTGTCACTTCAGTTTGCTCCTGCTGTCGCTGTTCGTCAATATGATTGGAGTAGAAAGCAGATATTCTCGTTGTCTGTTACCGAATTGGGAACTATAATGAGCCTTGGTTCCAGGGATTCATGTGAATTTTTCCATGATCCAAACAAAGGAAGAAGTGATGAAGGTAAGGTCAGGAAGGTGTTGAAGGTAGAGCCGCTTCCAGATGGTTCTGGCCGCTTCTTTAATCTCAGTGTTCAAAACAAGCTTATAAATATGGATGAGAGCATTTATATCCCCATTACCAAGGGAGAGTACACCATTCTCATCTCAGCATTCAATCCTATCAGGACATATGTGCCTGCACTAAATGAAATGAGGGAGTACAAGGAAAAAGAAAAGTGAGAAGGCAGATAGAGAAGGGCATTACTGTTTCTGGTTGAAACTGCGATGTGGCGAATCCTTGGAATTATAGGTTGGCACACCTTTGGAAATTCAATAAATCCAGAGGATGGAATCCGTGCAGACAATGCTAATTCCAGAGCAGGCACTGACTATGAATGGAACAGATAG

Network for GWHGAAZE022825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08536.12	Whirly	91	225	2.20E-56

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Whirly

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006952	biological_process	defense response
GO:0003677	molecular_function	DNA binding
GO:0003697	molecular_function	single-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.641
	SRR3591706	second leaf	14.345
	SRR3591707	mature leaf	14.465
	SRR3591708	Shoot apex	48.730
	SRR3591709	Stem	12.452
	SRR3591710	White floral bud	13.944
	SRR3591711	White flower	30.159
	SRR3591712	Green floral bud	27.254
	SRR3591713	Yellow flower	22.818
SRP173429	SRR8316895	Juvenile bud stage	17.280
	SRR8316896	Juvenile bud stage	21.953
	SRR8316897	Juvenile bud stage	10.315
	SRR8316894	Third green stage	11.303
	SRR8316900	Third green stage	37.578
	SRR8316901	Third green stage	30.013
	SRR8316898	Complete white stage	5.881
	SRR8316899	Complete white stage	20.955
	SRR8316903	Complete white stage	8.385
	SRR8316902	Silver flowering stage	7.789
	SRR8316904	Silver flowering stage	9.056
	SRR8316905	Silver flowering stage	4.082
	SRR8316906	Gold flowering stage	20.089
	SRR8316907	Gold flowering stage	20.621
	SRR8316908	Gold flowering stage	22.342
SRP132670	SRR6706286	Control	35.020
	SRR6706287	Light intensity 50%	39.021
	SRR6706288	Light intensity 20%	44.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.577
	CNS0095593	Slightly white alabastrum(diploid) 2	12.956
	CNS0095594	Slightly white alabastrum(diploid) 3	9.620
	CNS0095595	Whole white alabastrum(diploid) 2	15.324
	CNS0095596	Whole white alabastrum(diploid) 3	16.858
	CNS0095597	Whole white alabastrum(diploid) 4	13.989
	CNS0095598	Silvery flower (diploied) 1	15.296
	CNS0095599	Silvery flower (diploied) 2	14.497
	CNS0095600	Silvery flower (diploied) 3	23.136
	CNS0095601	Golden flower (diploid) 1	13.830
	CNS0095602	Golden flower (diploid) 2	23.905
	CNS0095603	Golden flower (diploid) 3	23.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.925
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.538
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.747
	CNS0095610	Silvery flower (tetraploid) 1	29.626
	CNS0095611	Silvery flower (tetraploid) 2	38.100
	CNS0095612	Silvery flower (tetraploid) 3	29.072
	CNS0095613	Golden flower (tetraploid) 1	17.859
	CNS0095614	Golden flower (tetraploid) 2	28.834
	CNS0095615	Golden flower (tetraploid) 3	28.578
CRA001975	CRR073297	Stem 1	29.466
	CRR073298	Stem 2	30.986
	CRR073299	Stem 3	31.205
	CRR073300	Leaf 1	27.417
	CRR073301	Leaf 2	27.649
	CRR073302	Leaf 3	31.347
	CRR073303	Juvenile bud 1	29.768
	CRR073304	Juvenile bud 2	26.802
	CRR073305	Juvenile bud 3	23.704
	CRR073306	Third green 1	9.344
	CRR073307	Third green 2	3.548
	CRR073308	Third green 3	6.723
	CRR073309	Second white 1	20.553
	CRR073310	Second white 2	11.868
	CRR073311	Second white 3	7.072
	CRR073312	Silver flowering 1	10.370
	CRR073313	Silver flowering 2	7.767
	CRR073314	Silver flowering 3	9.962
	CRR073315	Gold flowering 1	25.637
	CRR073316	Gold flowering 2	27.390
	CRR073317	Gold flowering 3	28.023
	CRR073318	Tawny withering 1	14.237
	CRR073319	Tawny withering 2	10.757
	CRR073320	Tawny withering 3	12.601