Gene detail

Detail information of GWHGAAZE022828

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84072.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	4E-101	alpha-amylase
Swissprot	tr\|Q94A41\|AMY3_ARATH	0	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|S4SKP2\|S4SKP2_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT1G69830.1	0	alpha-amylase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79357879	79364022	+
GWHAAZE00000006	mRNA	79357879	79364022	+
GWHAAZE00000006	exon	79357879	79358169	+
GWHAAZE00000006	exon	79359071	79359201	+
GWHAAZE00000006	exon	79359403	79359457	+
GWHAAZE00000006	exon	79359537	79359659	+
GWHAAZE00000006	exon	79359817	79359937	+
GWHAAZE00000006	exon	79360398	79360741	+
GWHAAZE00000006	exon	79361208	79361857	+
GWHAAZE00000006	exon	79362046	79362342	+
GWHAAZE00000006	exon	79362522	79362771	+
GWHAAZE00000006	exon	79362931	79363053	+
GWHAAZE00000006	exon	79363469	79363636	+
GWHAAZE00000006	exon	79363864	79364022	+
GWHAAZE00000006	CDS	79357879	79358169	+
GWHAAZE00000006	CDS	79359071	79359201	+
GWHAAZE00000006	CDS	79359403	79359457	+
GWHAAZE00000006	CDS	79359537	79359659	+
GWHAAZE00000006	CDS	79359817	79359937	+
GWHAAZE00000006	CDS	79360398	79360741	+
GWHAAZE00000006	CDS	79361208	79361857	+
GWHAAZE00000006	CDS	79362046	79362342	+
GWHAAZE00000006	CDS	79362522	79362771	+
GWHAAZE00000006	CDS	79362931	79363053	+
GWHAAZE00000006	CDS	79363469	79363636	+
GWHAAZE00000006	CDS	79363864	79364022	+

Transcript Sequence
>GWHTAAZE022858 ATGTCGAGTGTTGCTTTAGAGCCCCTCATTCATCAGTGTCGCAGAGAAACCCCAAAATATCGCACAAATTTGAAAAAGGCCATCAAATTATCATCATCAATTTCTTTGAATTACAACAACAGTCCGACGAGGCTAAAATTCAATGGCGTCAGGTTCTGCAGCAACTTCAAACCTTCTTCTAGGGCTTCAACCGCCACCATCAGAGCTGCTACCTCCACCACCGAAACATCGCTCCTCGAAACCACCGATGTCTTCTTCACCAAAACATTTCCACTCAAACGAACTGACAAGTTGGAGGGAAAGATATTAATCAGATTAGATAATGGTAAAGATGAAGACAATTGGCAGCTTACTGTGGGATGTACTCTTCCAGGGAAGTGGGTTCTTCACTGGGGAGTTCATTACATCAATGATGTCGGCAGTGAATGGGATCAACCTCCTCTCGAGATGATACCATCAGATTCTATTTCCATTAAGGACTACGCGATTGAGACTCCTTTGAAAAAATCATCTGCAGCACTGGAAGGAGACATGCTCCACGAAGTGAAGATTGACTTTAACACTAATAGTTCAATTGCAGCTATAAACTTTGTATTGAAGGATGAGGGAACTGGAGCTTGGTATCAGCACAAGGGTAGAGACTTCAAGGTGCCTCTTATTGATTGTCTTCACAGCAATACCAATACTGTAGGAGCTAAAAAGGGCTACGGCATTTGGCCAGTGGTGTCCGACATGCTTCTCTCATCACATGGAGCCCGTACTAAGGTTGAAGACAGCATTGATGACATAGGAGAACCTAATCAGCAAAAGAGGCTCCTCAAAGGCTTCCATGAAGAGCATTCTATTGTAAAGGAAAATATTTTTGATAACTCTCTGAGTATTTCTGTCAAAAGATGCCCAGATACAGCAAACAATCTTTTGTACATAGAAACTGATCTACCTGGAGATGTTGTTGTGCACTGGGGAGTTTGCAAAGATGAGGGTAAAAAATGGGAAATCCCAGCTGAGCCATATCCAGCTGAAACACTAGTTTTCAAGGGCAAGGCTTTGCGCACTTTGTTGCAGCGAAAAGAGGGTGGAGATGGCGCTAGTGGATTATTTTCTTTAAGTGATGAATTTGTAGGATTTCTTTTTGTGCTGAAGCTAAATGAAAGCACTTGGTTAAATTGTATGGGAAATGATTTTTACATACCCCTTTCAAACTCAAATGGCTTGGGAACTCCACCTATACAACTTCAATATGAAGAACAGGAACAAAAGGATTCTTCTGAAAGTGTGGAATCAGATTCTTCATACACTGATGGAATTATCTGTGAAATAAGGGATTTAGTTAGTGACATTTCCTCCAAAAAAAGTCAAACAGTGAAGAGCAAAGAAGCACAAGAAATCATCCTTCAAGAAATCGAAAAGCTGGCGGCAGAGGCCTATAGTATCTTCAGAAGCTCTGTTCCAACATTTTCAGGGATTGCTTTCTCGGAAACTGAGGCAGTAGAACCTCCTGTGAAGATATGTTCAGGAACAGGTACAGGTTTTGAAATAGTGTGCCAGGGATTTAATTGGGAGTCTCACAAATCCGGGAGATGGTACATGGAACTCCTAGAAAAAGCGACAGATTTATCTTCACTTGGTTTTACTGTTATTTGGTTACCCCCACCTACAGAATCTATCTCACCTGAAGGATACATGCCAAAAGATCTATATAATTTAAACTCCAGGTATGGTAGTATTGACGAGTTGAAGGTTCTTGTGAAGAGATTCCATGAAGTTGGTATTAAAGTTCTCGGAGATGCGGTCTTAAACCACCGCTGTGCACATTATCAGAATCAAAATGGGATTTGGAATATTTATGGTGGTAAATTGAATTGGGATGATCGAGCAGTTGTTGCTGATGATCCACATTTCCAGGGAAGGGGAAATAAGAGTAGTGGAGAGAATTTCCATGCTGCTCCAAATATTGATCATTCTCAAGAATTCGTGAGGAATGATCTAAAAGAGTGGTTATGCTGGATGAGGAAAGAAATCGGGTATGACGGATGGAGGCTTGATTTTGTTAGGGGATTTTGGGGTGGTTATGTGAAGGACTACATAGATGCAAGTGAGCCATACTTTGCTGTAGGCGAATATTGGGATTCTCTTAGTTACAAATACGGTGAGATGGAACACAATCAAGATGCCCATCGGCAGAGAATTGTTGACTGGATTAGTGCTACCAGTGGAACTGCTGGTGCATTTGATGTCACTACAAAAGGAATTCTTCATGCTGCACTTGAAAGATGTGAATACTGGCGACTATCGGATCAGAAGGGAAAGCCTCCAGGTGTTGTTGGCTGGTGGCCATCTCGGGCTGTTACCTTCATAGAGAACCATGATACGGGTTCTACTCAGGGCCATTGGAGATTTCCAGGTGGAAAGGAGATGCAAGGATACGCCTACATCCTGACTCATCCTGGAACACCTTCAGTTTTCTATGATCACATTTTCTCTCACTACCAATCCGAAATTTCGTCACTTATCTCCATCAGAAACCAAAACAAAATTCACTGCAGGAGTATAGTTCAAATAACCAAAGCAGAAAGGGATGTTTATGCAGCAATAATTGATGAAAAAGTGGCAGTGAAAATTGGACCGGGTTATTACGAGCCCCCAAGTGGGACCCAAAAATGGTCATTAGCCATTGAGGGTGGAGATTACAAGGTCTGGGAAGCATCATAA

Network for GWHGAAZE022828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	539	822	2.80E-18
PF07821.13	Alpha-amyl_C2	844	901	7.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	103.602
	SRR3591706	second leaf	51.095
	SRR3591707	mature leaf	95.503
	SRR3591708	Shoot apex	53.243
	SRR3591709	Stem	83.336
	SRR3591710	White floral bud	231.707
	SRR3591711	White flower	526.008
	SRR3591712	Green floral bud	108.906
	SRR3591713	Yellow flower	735.064
SRP173429	SRR8316895	Juvenile bud stage	76.551
	SRR8316896	Juvenile bud stage	113.711
	SRR8316897	Juvenile bud stage	50.575
	SRR8316894	Third green stage	72.550
	SRR8316900	Third green stage	165.148
	SRR8316901	Third green stage	188.911
	SRR8316898	Complete white stage	103.984
	SRR8316899	Complete white stage	276.273
	SRR8316903	Complete white stage	268.416
	SRR8316902	Silver flowering stage	243.901
	SRR8316904	Silver flowering stage	419.252
	SRR8316905	Silver flowering stage	212.783
	SRR8316906	Gold flowering stage	665.947
	SRR8316907	Gold flowering stage	476.460
	SRR8316908	Gold flowering stage	531.985
SRP132670	SRR6706286	Control	168.927
	SRR6706287	Light intensity 50%	162.657
	SRR6706288	Light intensity 20%	167.930
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.121
	CNS0095593	Slightly white alabastrum(diploid) 2	43.418
	CNS0095594	Slightly white alabastrum(diploid) 3	45.487
	CNS0095595	Whole white alabastrum(diploid) 2	46.672
	CNS0095596	Whole white alabastrum(diploid) 3	35.205
	CNS0095597	Whole white alabastrum(diploid) 4	50.541
	CNS0095598	Silvery flower (diploied) 1	143.433
	CNS0095599	Silvery flower (diploied) 2	102.334
	CNS0095600	Silvery flower (diploied) 3	439.676
	CNS0095601	Golden flower (diploid) 1	152.291
	CNS0095602	Golden flower (diploid) 2	473.782
	CNS0095603	Golden flower (diploid) 3	448.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.862
	CNS0095606	Slightly white alabastrum(tetraploid) 3	120.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.609
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.599
	CNS0095609	Whole white alabastrum(tetraploid) 3	99.027
	CNS0095610	Silvery flower (tetraploid) 1	479.350
	CNS0095611	Silvery flower (tetraploid) 2	386.879
	CNS0095612	Silvery flower (tetraploid) 3	120.092
	CNS0095613	Golden flower (tetraploid) 1	244.146
	CNS0095614	Golden flower (tetraploid) 2	483.987
	CNS0095615	Golden flower (tetraploid) 3	449.288
CRA001975	CRR073297	Stem 1	82.688
	CRR073298	Stem 2	78.301
	CRR073299	Stem 3	50.376
	CRR073300	Leaf 1	127.459
	CRR073301	Leaf 2	98.236
	CRR073302	Leaf 3	68.631
	CRR073303	Juvenile bud 1	92.269
	CRR073304	Juvenile bud 2	84.211
	CRR073305	Juvenile bud 3	113.315
	CRR073306	Third green 1	87.497
	CRR073307	Third green 2	41.329
	CRR073308	Third green 3	79.434
	CRR073309	Second white 1	45.030
	CRR073310	Second white 2	60.355
	CRR073311	Second white 3	85.199
	CRR073312	Silver flowering 1	64.739
	CRR073313	Silver flowering 2	46.560
	CRR073314	Silver flowering 3	65.555
	CRR073315	Gold flowering 1	29.336
	CRR073316	Gold flowering 2	42.919
	CRR073317	Gold flowering 3	20.505
	CRR073318	Tawny withering 1	25.673
	CRR073319	Tawny withering 2	26.177
	CRR073320	Tawny withering 3	21.373