Gene detail

Detail information of GWHGAAZE022873

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00229.1	2.70061E-94	unnamed protein product [Coffea canephora]
COG	YP_007102288.1	5E-16	response regulator receiver protein
Swissprot	tr\|Q9ZWS9\|ARR3_ARATH	2E-80	Two-component response regulator ARR3
trEMBL	tr\|A0A068TWC5\|A0A068TWC5_COFCA	1E-94	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00229.1}
TAIR10	AT1G59940.1	1E-54	response regulator 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79934398	79936259	-
GWHAAZE00000006	mRNA	79934398	79936259	-
GWHAAZE00000006	exon	79934398	79934740	-
GWHAAZE00000006	exon	79935321	79935391	-
GWHAAZE00000006	exon	79935699	79935776	-
GWHAAZE00000006	exon	79935924	79936000	-
GWHAAZE00000006	exon	79936097	79936259	-
GWHAAZE00000006	CDS	79936097	79936259	-
GWHAAZE00000006	CDS	79935924	79936000	-
GWHAAZE00000006	CDS	79935699	79935776	-
GWHAAZE00000006	CDS	79935321	79935391	-
GWHAAZE00000006	CDS	79934398	79934740	-

Transcript Sequence
>GWHTAAZE022903 ATGGCCAGAAACGGCGTGTTTTCCCGGAGAAGGTCGGAGAAGATCGATGGATTCGGACATCTATCGCCGTCAGATTCTCACGATGTTCATGTTCTTGCCGTCGATGATAGTCTCGTCGATCGGAAGGTCATTGAACGATTGCTCAAAATTACCTCTTGTAAAGTGACAGCAGTGGATAGTGGAAGGAGAGCTTTGCAATTCCTAGGTTTAGATGAAGAGAAGCGATCTGTTGATATAGATGATTTGAAGGTGGATCTGATAATCACCGACTATTGTATGCCCGGAATGACTGGTTACGAATTGCTTAAAAAGATCAAGGGATCCTCTACGTTTAGAGAGGTACCAGTTGTGATAATGTCATCGGAAAATGTTTTGGCACGGATCGACAGATGTTTGGAGGAAGGTGCAGAGGATTTTATAGTAAAACCAGTAAAATTGTCGGATGTGAAACGATTGAAGGATTACATGTTTGGTGAGAGTGGAATTGTAGTAGAAAATGAAGATAGAGTGATTCAGAACAAGAGGAAGTTGCAAGACTTGTCTGATGATGATGATGCATCATCACCACCTTCCATCTCATCCTTCCCACCATCACCTCCACCGTCCATCTCATCATCACCATCCCCTTCACCACTTTCATCGTCATCGCCATCGCCATCGCCGCCACCATCGTACTCCCCATCATTGCTAGATTCCCCAACGAGGCGGCTTAAGATGACTAACTATGATTAA

Network for GWHGAAZE022873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	31	149	5.50E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14492	ARR-A	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.590
	SRR3591706	second leaf	11.808
	SRR3591707	mature leaf	49.029
	SRR3591708	Shoot apex	8.456
	SRR3591709	Stem	127.444
	SRR3591710	White floral bud	52.837
	SRR3591711	White flower	93.346
	SRR3591712	Green floral bud	71.096
	SRR3591713	Yellow flower	23.329
SRP173429	SRR8316895	Juvenile bud stage	41.008
	SRR8316896	Juvenile bud stage	59.288
	SRR8316897	Juvenile bud stage	45.124
	SRR8316894	Third green stage	60.032
	SRR8316900	Third green stage	211.355
	SRR8316901	Third green stage	240.430
	SRR8316898	Complete white stage	9.117
	SRR8316899	Complete white stage	103.257
	SRR8316903	Complete white stage	18.468
	SRR8316902	Silver flowering stage	2.089
	SRR8316904	Silver flowering stage	3.318
	SRR8316905	Silver flowering stage	0.857
	SRR8316906	Gold flowering stage	1.766
	SRR8316907	Gold flowering stage	2.630
	SRR8316908	Gold flowering stage	7.242
SRP132670	SRR6706286	Control	112.338
	SRR6706287	Light intensity 50%	102.207
	SRR6706288	Light intensity 20%	93.706
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	141.364
	CNS0095593	Slightly white alabastrum(diploid) 2	199.368
	CNS0095594	Slightly white alabastrum(diploid) 3	199.513
	CNS0095595	Whole white alabastrum(diploid) 2	111.127
	CNS0095596	Whole white alabastrum(diploid) 3	118.651
	CNS0095597	Whole white alabastrum(diploid) 4	68.723
	CNS0095598	Silvery flower (diploied) 1	171.961
	CNS0095599	Silvery flower (diploied) 2	94.383
	CNS0095600	Silvery flower (diploied) 3	45.324
	CNS0095601	Golden flower (diploid) 1	120.633
	CNS0095602	Golden flower (diploid) 2	62.822
	CNS0095603	Golden flower (diploid) 3	59.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.886
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.454
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.755
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.747
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.533
	CNS0095610	Silvery flower (tetraploid) 1	13.652
	CNS0095611	Silvery flower (tetraploid) 2	11.199
	CNS0095612	Silvery flower (tetraploid) 3	8.773
	CNS0095613	Golden flower (tetraploid) 1	1.300
	CNS0095614	Golden flower (tetraploid) 2	8.199
	CNS0095615	Golden flower (tetraploid) 3	2.651
CRA001975	CRR073297	Stem 1	81.876
	CRR073298	Stem 2	124.977
	CRR073299	Stem 3	79.726
	CRR073300	Leaf 1	125.342
	CRR073301	Leaf 2	208.282
	CRR073302	Leaf 3	127.111
	CRR073303	Juvenile bud 1	39.146
	CRR073304	Juvenile bud 2	26.428
	CRR073305	Juvenile bud 3	42.208
	CRR073306	Third green 1	4.683
	CRR073307	Third green 2	3.055
	CRR073308	Third green 3	6.054
	CRR073309	Second white 1	0.107
	CRR073310	Second white 2	0.365
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.050
	CRR073313	Silver flowering 2	0.106
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	22.785
	CRR073316	Gold flowering 2	30.369
	CRR073317	Gold flowering 3	28.709
	CRR073318	Tawny withering 1	32.148
	CRR073319	Tawny withering 2	52.991
	CRR073320	Tawny withering 3	49.311