Gene detail

Detail information of GWHGAAZE022877

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00220.1	0	unnamed protein product [Coffea canephora]
COG	YP_002463148.1	9E-30	NB-ARC domain-containing protein
Swissprot	tr\|B7FNU7\|LIS1_PHATC	1E-10	Lissencephaly-1 homolog {ECO:0000255\|HAMAP-Rule:MF_03141}
trEMBL	tr\|A0A068TVC9\|A0A068TVC9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00220.1}
TAIR10	AT1G24130.1	3E-111	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80020015	80021253	+
GWHAAZE00000006	mRNA	80020015	80021253	+
GWHAAZE00000006	exon	80020015	80020921	+
GWHAAZE00000006	exon	80020952	80021253	+
GWHAAZE00000006	CDS	80020015	80020921	+
GWHAAZE00000006	CDS	80020952	80021253	+

Transcript Sequence
>GWHTAAZE022907 ATGGGATTTCTTCCATGTCCTCTAGCACGCAAGTCAAGTAAAGAATCTGACTATTCTCACTCACATTCAACAGAGTCCTCCTTATCCTCTCAACCAAGCTTACCATCAGTTCCTTCACTAACCCCACCTTGCCAACCCTCCACCACCCACAACCACTGCATCTCCACCCTCAAAGGCCACACCTCCTCCGTATTCTCCCTAGCCCTCGCCGGTAAACACCTCTATAGCGGCTCCTCCGACAGCCAAATCCGCATATGGCCCCAAAAACCCTCCACTATGCCCAACAGTCACAAAGTCGCCACGTGCCACAGCGCAGTCAAATCGCTAGTTGTATTAAACGATAAACTATTCACCGCCCACAGCGATCACAAAATACGCGTGTGGAAGATTAACGACATCGAGGATTCAAAACACTACTCCTACAAGTGCATAGCCACATTGCCAACACTCAACGACCGCGTAACAACCTTATTTTCATCAAAGAATTACGTTAAGGTCAGCCGCCACAAGACTTGCACGTGGGTGCACCACTTGGACGCCATAGCCGCACTGGCCTTATCGAAAGACGGTTCCATGTTGTACTCGGTCTCGTGGGATCGGGCGTTTAAGGTGTGGAGAACCTCTGATTTCAAATGCTTAGAGTCCACGTGGAATGCACACGATGATGCCATTAACGCAATCGCGTTGTCCAATGATGAATTTGTCTACACAGGCTCCGCGGATAGGAAGATTAAGGTATGGAGGAAAAGTGAAGGGGATAAAAAGCATAAATTAGTGGATACTCTCGAGAAGCATAAATCGGCTGTCAATGCGTTGGCTCTTAGTGAGGATGGGACCGTGTTATATTCGGGTGCTTGTGATCGGTCAATAATCGTGTGGGGAAAAGACGGTGGCGGTGGAGGTGGAGCGTTGAGGGGGCATAGTAAGGCGATTTTGTGCTTGGGGGTGGTGGGGGATTTGGTGTGTAGTGGTTCGGCTGACAAAACGGTTAGGATTTGGAGCAGAGGAATTGGGAAAAGTTATTGGTGTTTGGGAGTGTTGGACGGACACAGAGGGCCGGTAAAGTGTTTGACCGCAGCTGTGGATAGTTGTACTGATAGCAAAACTAGTGGTACTCATGAGGGTGGGAATTCTTATCTGGTTTATAGTGGGAGTTTGGATTGTGATATAAAGGTCTGGCAAATATGGGTTCCTGCTTCCAGTACTTAA

Network for GWHGAAZE022877

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	52	86	0.00055
PF00400.33	WD40	174	205	0.085
PF00400.33	WD40	216	247	0.017
PF00400.33	WD40	258	293	0.0016
PF00400.33	WD40	304	334	0.00033
PF00400.33	WD40	342	393	0.0069

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.797
	SRR3591706	second leaf	5.848
	SRR3591707	mature leaf	4.181
	SRR3591708	Shoot apex	4.241
	SRR3591709	Stem	36.896
	SRR3591710	White floral bud	1.921
	SRR3591711	White flower	8.531
	SRR3591712	Green floral bud	0.593
	SRR3591713	Yellow flower	3.370
SRP173429	SRR8316895	Juvenile bud stage	20.544
	SRR8316896	Juvenile bud stage	20.147
	SRR8316897	Juvenile bud stage	18.607
	SRR8316894	Third green stage	0.906
	SRR8316900	Third green stage	1.089
	SRR8316901	Third green stage	2.269
	SRR8316898	Complete white stage	0.148
	SRR8316899	Complete white stage	8.817
	SRR8316903	Complete white stage	0.854
	SRR8316902	Silver flowering stage	1.620
	SRR8316904	Silver flowering stage	0.427
	SRR8316905	Silver flowering stage	0.159
	SRR8316906	Gold flowering stage	0.590
	SRR8316907	Gold flowering stage	0.828
	SRR8316908	Gold flowering stage	1.153
SRP132670	SRR6706286	Control	2.007
	SRR6706287	Light intensity 50%	2.162
	SRR6706288	Light intensity 20%	1.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.845
	CNS0095593	Slightly white alabastrum(diploid) 2	22.039
	CNS0095594	Slightly white alabastrum(diploid) 3	23.077
	CNS0095595	Whole white alabastrum(diploid) 2	30.362
	CNS0095596	Whole white alabastrum(diploid) 3	0.809
	CNS0095597	Whole white alabastrum(diploid) 4	16.633
	CNS0095598	Silvery flower (diploied) 1	63.141
	CNS0095599	Silvery flower (diploied) 2	104.383
	CNS0095600	Silvery flower (diploied) 3	30.107
	CNS0095601	Golden flower (diploid) 1	103.910
	CNS0095602	Golden flower (diploid) 2	69.272
	CNS0095603	Golden flower (diploid) 3	64.907
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.955
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.781
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.100
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.050
	CNS0095610	Silvery flower (tetraploid) 1	0.435
	CNS0095611	Silvery flower (tetraploid) 2	1.274
	CNS0095612	Silvery flower (tetraploid) 3	2.418
	CNS0095613	Golden flower (tetraploid) 1	0.731
	CNS0095614	Golden flower (tetraploid) 2	1.088
	CNS0095615	Golden flower (tetraploid) 3	0.118
CRA001975	CRR073297	Stem 1	6.734
	CRR073298	Stem 2	8.979
	CRR073299	Stem 3	6.911
	CRR073300	Leaf 1	4.116
	CRR073301	Leaf 2	7.254
	CRR073302	Leaf 3	2.603
	CRR073303	Juvenile bud 1	1.326
	CRR073304	Juvenile bud 2	1.527
	CRR073305	Juvenile bud 3	6.249
	CRR073306	Third green 1	1.716
	CRR073307	Third green 2	6.205
	CRR073308	Third green 3	2.741
	CRR073309	Second white 1	4.366
	CRR073310	Second white 2	3.018
	CRR073311	Second white 3	2.341
	CRR073312	Silver flowering 1	13.445
	CRR073313	Silver flowering 2	17.049
	CRR073314	Silver flowering 3	9.110
	CRR073315	Gold flowering 1	184.443
	CRR073316	Gold flowering 2	256.988
	CRR073317	Gold flowering 3	114.144
	CRR073318	Tawny withering 1	35.104
	CRR073319	Tawny withering 2	77.831
	CRR073320	Tawny withering 3	29.562