Detail information of GWHGAAZE022894


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP21324.14.7039E-143hypothetical protein JCGZ_21795 [Jatropha curcas]
Swissprottr|Q9FL07|ATL46_ARATH2E-117RING-H2 finger protein ATL46
trEMBLtr|A0A067JP67|A0A067JP67_JATCU2E-143Uncharacterized protein {ECO:0000313|EMBL:KDP21324.1}
TAIR10AT5G40250.13E-82RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8027125580272400+
GWHAAZE00000006mRNA8027125580272400+
GWHAAZE00000006exon8027125580272146+
GWHAAZE00000006exon8027221080272400+
GWHAAZE00000006CDS8027125580272146+
GWHAAZE00000006CDS8027221080272400+
Transcript Sequence

Network for GWHGAAZE022894

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21381812.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.768
SRR3591706second leaf3.231
SRR3591707mature leaf1.880
SRR3591708Shoot apex5.733
SRR3591709Stem5.922
SRR3591710White floral bud2.670
SRR3591711White flower5.174
SRR3591712Green floral bud2.185
SRR3591713Yellow flower5.207
SRP173429 SRR8316895Juvenile bud stage 2.696
SRR8316896Juvenile bud stage 4.127
SRR8316897Juvenile bud stage 1.010
SRR8316894Third green stage 1.093
SRR8316900Third green stage 2.340
SRR8316901Third green stage 1.314
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.717
SRR8316903Complete white stage 0.379
SRR8316902Silver flowering stage0.779
SRR8316904Silver flowering stage0.682
SRR8316905Silver flowering stage0.140
SRR8316906Gold flowering stage 1.416
SRR8316907Gold flowering stage 1.480
SRR8316908Gold flowering stage 1.875
SRP132670SRR6706286Control0.890
SRR6706287Light intensity 50%0.873
SRR6706288Light intensity 20%1.213
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.589
CNS0095593Slightly white alabastrum(diploid) 23.893
CNS0095594Slightly white alabastrum(diploid) 32.922
CNS0095595Whole white alabastrum(diploid) 22.491
CNS0095596Whole white alabastrum(diploid) 31.338
CNS0095597Whole white alabastrum(diploid) 42.074
CNS0095598Silvery flower (diploied) 12.219
CNS0095599Silvery flower (diploied) 22.229
CNS0095600Silvery flower (diploied) 31.626
CNS0095601Golden flower (diploid) 12.487
CNS0095602Golden flower (diploid) 22.813
CNS0095603Golden flower (diploid) 32.366
CNS0095604Slightly white alabastrum(tetraploid) 12.762
CNS0095605Slightly white alabastrum(tetraploid) 22.275
CNS0095606Slightly white alabastrum(tetraploid) 34.456
CNS0095607Whole white alabastrum(tetraploid) 11.892
CNS0095608Whole white alabastrum(tetraploid) 20.531
CNS0095609Whole white alabastrum(tetraploid) 31.130
CNS0095610Silvery flower (tetraploid) 11.552
CNS0095611Silvery flower (tetraploid) 21.935
CNS0095612Silvery flower (tetraploid) 30.644
CNS0095613Golden flower (tetraploid) 10.960
CNS0095614Golden flower (tetraploid) 21.424
CNS0095615Golden flower (tetraploid) 30.992
CRA001975CRR073297Stem 12.491
CRR073298Stem 22.269
CRR073299Stem 30.703
CRR073300Leaf 13.005
CRR073301Leaf 22.809
CRR073302Leaf 31.574
CRR073303Juvenile bud 10.310
CRR073304Juvenile bud 20.240
CRR073305Juvenile bud 31.861
CRR073306Third green 10.290
CRR073307Third green 20.161
CRR073308Third green 30.051
CRR073309Second white 10.182
CRR073310Second white 20.116
CRR073311Second white 30.368
CRR073312Silver flowering 11.537
CRR073313Silver flowering 21.370
CRR073314Silver flowering 30.810
CRR073315Gold flowering 12.645
CRR073316Gold flowering 22.270
CRR073317Gold flowering 31.985
CRR073318Tawny withering 14.606
CRR073319Tawny withering 22.410
CRR073320Tawny withering 33.892