Detail information of GWHGAAZE022895


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00189.10unnamed protein product [Coffea canephora]
Swissprottr|Q9ZUI6|AP1G2_ARATH0AP-1 complex subunit gamma-2
trEMBLtr|A0A068TW96|A0A068TW96_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00189.1}
TAIR10AT1G60070.10Adaptor protein complex AP-1, gamma subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8027599580292231-
GWHAAZE00000006mRNA8027599580292231-
GWHAAZE00000006exon8029220080292231-
GWHAAZE00000006exon8029035280290634-
GWHAAZE00000006exon8028998680290180-
GWHAAZE00000006exon8028825680288429-
GWHAAZE00000006exon8028668680286865-
GWHAAZE00000006exon8028588680286040-
GWHAAZE00000006exon8028551080285600-
GWHAAZE00000006exon8028483380284996-
GWHAAZE00000006exon8028437880284432-
GWHAAZE00000006exon8028335380283475-
GWHAAZE00000006exon8028314880283243-
GWHAAZE00000006exon8027886680278993-
GWHAAZE00000006exon8027848780278591-
GWHAAZE00000006exon8027811180278373-
GWHAAZE00000006exon8027736580277604-
GWHAAZE00000006exon8027707680277257-
GWHAAZE00000006exon8027643580276539-
GWHAAZE00000006exon8027599580276090-
GWHAAZE00000006CDS8029220080292231-
GWHAAZE00000006CDS8029035280290634-
GWHAAZE00000006CDS8028998680290180-
GWHAAZE00000006CDS8028825680288429-
GWHAAZE00000006CDS8028668680286865-
GWHAAZE00000006CDS8028588680286040-
GWHAAZE00000006CDS8028551080285600-
GWHAAZE00000006CDS8028483380284996-
GWHAAZE00000006CDS8028437880284432-
GWHAAZE00000006CDS8028335380283475-
GWHAAZE00000006CDS8028314880283243-
GWHAAZE00000006CDS8027886680278993-
GWHAAZE00000006CDS8027848780278591-
GWHAAZE00000006CDS8027811180278373-
GWHAAZE00000006CDS8027736580277604-
GWHAAZE00000006CDS8027707680277257-
GWHAAZE00000006CDS8027643580276539-
GWHAAZE00000006CDS8027599580276090-
Transcript Sequence

Network for GWHGAAZE022895

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.21Adaptin_N275902.40E-132
PF02883.21Alpha_adaptinC27718851.90E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12391AP1G1 Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0030117cellular_componentmembrane coat
GO:0005794cellular_componentGolgi apparatus
GO:0030121cellular_componentAP-1 adaptor complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.441
SRR3591706second leaf25.877
SRR3591707mature leaf18.090
SRR3591708Shoot apex28.990
SRR3591709Stem37.826
SRR3591710White floral bud34.306
SRR3591711White flower29.657
SRR3591712Green floral bud41.202
SRR3591713Yellow flower26.742
SRP173429 SRR8316895Juvenile bud stage 19.891
SRR8316896Juvenile bud stage 28.015
SRR8316897Juvenile bud stage 14.049
SRR8316894Third green stage 14.464
SRR8316900Third green stage 39.868
SRR8316901Third green stage 35.180
SRR8316898Complete white stage 12.688
SRR8316899Complete white stage 36.608
SRR8316903Complete white stage 26.597
SRR8316902Silver flowering stage12.274
SRR8316904Silver flowering stage19.980
SRR8316905Silver flowering stage9.297
SRR8316906Gold flowering stage 28.226
SRR8316907Gold flowering stage 23.905
SRR8316908Gold flowering stage 28.386
SRP132670SRR6706286Control27.631
SRR6706287Light intensity 50%28.665
SRR6706288Light intensity 20%31.244
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.322
CNS0095593Slightly white alabastrum(diploid) 216.916
CNS0095594Slightly white alabastrum(diploid) 316.900
CNS0095595Whole white alabastrum(diploid) 220.352
CNS0095596Whole white alabastrum(diploid) 320.155
CNS0095597Whole white alabastrum(diploid) 419.217
CNS0095598Silvery flower (diploied) 116.513
CNS0095599Silvery flower (diploied) 215.154
CNS0095600Silvery flower (diploied) 331.726
CNS0095601Golden flower (diploid) 113.325
CNS0095602Golden flower (diploid) 228.941
CNS0095603Golden flower (diploid) 324.928
CNS0095604Slightly white alabastrum(tetraploid) 124.144
CNS0095605Slightly white alabastrum(tetraploid) 221.028
CNS0095606Slightly white alabastrum(tetraploid) 335.697
CNS0095607Whole white alabastrum(tetraploid) 122.556
CNS0095608Whole white alabastrum(tetraploid) 220.040
CNS0095609Whole white alabastrum(tetraploid) 332.013
CNS0095610Silvery flower (tetraploid) 126.450
CNS0095611Silvery flower (tetraploid) 226.328
CNS0095612Silvery flower (tetraploid) 332.101
CNS0095613Golden flower (tetraploid) 115.496
CNS0095614Golden flower (tetraploid) 224.457
CNS0095615Golden flower (tetraploid) 326.360
CRA001975CRR073297Stem 134.358
CRR073298Stem 231.075
CRR073299Stem 328.075
CRR073300Leaf 136.481
CRR073301Leaf 233.929
CRR073302Leaf 329.634
CRR073303Juvenile bud 133.621
CRR073304Juvenile bud 224.763
CRR073305Juvenile bud 336.584
CRR073306Third green 120.268
CRR073307Third green 218.900
CRR073308Third green 320.101
CRR073309Second white 123.170
CRR073310Second white 222.517
CRR073311Second white 324.840
CRR073312Silver flowering 122.803
CRR073313Silver flowering 223.374
CRR073314Silver flowering 319.428
CRR073315Gold flowering 19.229
CRR073316Gold flowering 212.405
CRR073317Gold flowering 38.953
CRR073318Tawny withering 136.162
CRR073319Tawny withering 223.999
CRR073320Tawny withering 337.078