Gene detail

Detail information of GWHGAAZE022899

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN78769.1	0	hypothetical protein VITISV_024248 [Vitis vinifera]
COG	YP_008872897.1	1E-132	hypothetical protein RAAC3_TM7C00001G0736
Swissprot	tr\|Q9LRA7\|TPS9_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
trEMBL	tr\|A5B8V9\|A5B8V9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78769.1}
TAIR10	AT1G23870.1	0	trehalose-phosphatase/synthase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80349701	80352468	-
GWHAAZE00000006	mRNA	80349701	80352468	-
GWHAAZE00000006	exon	80349701	80350024	-
GWHAAZE00000006	exon	80350108	80350381	-
GWHAAZE00000006	exon	80350478	80352468	-
GWHAAZE00000006	CDS	80350478	80352468	-
GWHAAZE00000006	CDS	80350108	80350381	-
GWHAAZE00000006	CDS	80349701	80350024	-

Transcript Sequence
>GWHTAAZE022929 ATGGCATCAAGATCATGTTCAAACTGTATGGATTTGGCCTCTGGGGAATTGCTTGATATCCCTCAAGCTCCTAGTCCTAGAGCTCTGCCACGGGTGATGACTGTTCCTGGTATTATCTCTGATGTAGATGGTTATGGCAGTAATGTGGATTCAGATGGTACTTCATCAGTTTGTCAGGAGCGGAAAATTATTGTGGCAAATATGTTACCTTTGCACAGTCAAAAGGATGCAGAAACTGCCAAGTGGTGCTTTAGTTTGGATGAGGATTCACTTTTATTGCAATTGAGGGACGGTTTTTCGCCTGAAACTGAAGTTATATATGTTGGTTCACTTCAGGTTGATATAGATGCTAGTGAACAGGAAGAAGTTGCTCAGAAACTGCTGGATGATTTCAATTGCGTGCCAACCTTTCTTCCCCGTGACCTTCAGAAAAAGTTCTATTATGGTTTCTGCAAACAACACTTGTGGCCGCTCTTCCATTACATGCTCCCCATTTGCCCAGACCACGGCGAACGTTTCGACCCTGTGCTTTGGCAGGCATATGTCTCTGCAAATAAAATATTTGCAGATAAAATTATGGAAGTGGTTAATCCTGAGGACGATTATATCTGGATTCATGATTATCACCTCATGGTTCTCCCTACGTTTTTGAGGAAGTGCTACAATCGAGCGAAGATTGGATTCTTCCTCCACAGTCCATTTCCTTCTTCAGAAATATACCGAACTTTGTCTGTTAGATATGAAATTCTTAAAGGATTGTTAAATTGTGATCTAATTGGATTCCATACATTTGATTATGCTCGTCACTTCCTTTCATGTTGTAGTAGAATGATGGGTCTGGACTATGAATCCAAGCGAGGACACATTGCACTCGATTACTTCGGAAGAACAGTGTACATAAAAATTATGCCTGTAGGTATCCATATGGGTCGACTCGAATCTGTTTTACACCTTCGCTCTACCTCTGTCAAAGTAAAAGAGATCCGGGAAAAGTTCAAGGGGAAAAAGTTGATTGTTGGGGTTGATGACATGGACATATTCAAAGGTATCAGTCTGAAATTGTTAGCCTTTGAACAACTCTTACAGCAGCATGAAGAATTGCAGGGGAAATTAGTTTTGGTTCAAATAGTGAATCCTGCTAGGAGCTCAGGGAAGGATGTCCAGGAAGCAAAGAGGGAGACTTATTTAACTGCCAGTAGGATTAATGAGATTTATGGATTGTCTGATTATGAACCAGTGACTCTGATAGATCGGCCTGTTGCTCGTTATGAGAAGACGGCCTATTATGCTGTAGCCGAATGTTGCATAGTGAATGCTGTGAGGGACGGGATGAACTTAGTGCCCTACAAATACATTGTTTGCAGGCAGGGCTCGCCACATATGGATGAAGCTATGGGTCTCAAACCGGATTCTCCTCGCACTAGCATGCTGGTTGTGTCTGAGTTTATCGGTTGTTCACCATCTCTAAGTGGAGCTATTAGAGTTAACCCATGGGATATTGATTCTGTGGCTGAGGCTTTGAATTCGGCCATTACAATGTCTGATTCTGAGAAGCAAATGCGGCATGAGAAACACTATCGCTATGTTAGCTCCCATGATGTTGCTTATTGGGCTCGCAGCTTTGTACAGGATTTGGAGAGATCATGCAAAGATCAGTACAATAAGCGGTGCTGGGGAATCGGTTTAGGTCTGGGTTTCAGAGTTGTTTCCCTCTCTCCAAGTTTAAGAAAGTTGTCTATTGACTACATTGTCTCGGCCTATAAAAGGACAAATAGAAGGGCAATATTTCTGGACTACGACGGTACAGTCGTTCCTCAATCCTCTATTGTAAAAACCCCGAGCATGGAAGTTATAAATTCCCTGAATAGTCTGTGCAATGATCCCAAGAACACTGTGTTTATTGTTAGTGGAAGAGGGAGAAGTTCCTTGAGTGAGTGGCTTTCTCCTTGTGAGAGGCTAGGACTTGCTGCTGAACACGGGCACTTCATAAGGTGGAGTAAAAATTCCGAGTGGAAATCCAGTTCCTTGGCTGTTGATCTTGAGTGGAAGGAAATTGTCGAACCTGTTATGAAATTGTATACAGAAGCAACTGATGGCTCCAACATAGAGATTAAAGAGAGTGCTTTGGTCTGGCACCATCAAGATGCTGACCCTGACTTCGGATCCTGCCAAGCCAAGGAATTGCTTATTCATTTGGAAAGTGTTATCGCTAACGAACCTGCAGTGGTTAAACGAGGCCAGCATATTGTTGAAGTTAAGCCGCAAGGTGTAAGCAAAGGGTTGGTTGCCGAGAAAGTTCTATCAACAATGGTCAATGATGGGAAACCGCCAGATTTTGTGATGTGCATCGGAGATGATAGATCAGATGAAGACATGTTTGAGAGTATCTTACGCACAGCCTCTTGCGCATCCCTCCCCTCAGCTCCAGAGATTTTTGCTTGCACTGTGGGTCAAAAGCCAAGCAAGGCTAAGTATTACCTTGAAGATACAATTGATGTGGTTCGATTGCTTCAAGGTCTAGCTAGTGCTTCAAATCCAAAGCCTAGGCATACTGCCCAATTCCAAGTTTCTTTTGACACTGTTTTCTGA

Network for GWHGAAZE022899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	61	546	5.00E-188
PF02358.17	Trehalose_PPase	596	829	1.60E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.268
	SRR3591706	second leaf	1.698
	SRR3591707	mature leaf	1.183
	SRR3591708	Shoot apex	23.806
	SRR3591709	Stem	22.921
	SRR3591710	White floral bud	35.322
	SRR3591711	White flower	31.369
	SRR3591712	Green floral bud	14.373
	SRR3591713	Yellow flower	72.458
SRP173429	SRR8316895	Juvenile bud stage	7.083
	SRR8316896	Juvenile bud stage	7.905
	SRR8316897	Juvenile bud stage	5.157
	SRR8316894	Third green stage	4.795
	SRR8316900	Third green stage	19.967
	SRR8316901	Third green stage	17.061
	SRR8316898	Complete white stage	8.867
	SRR8316899	Complete white stage	2.207
	SRR8316903	Complete white stage	17.903
	SRR8316902	Silver flowering stage	14.105
	SRR8316904	Silver flowering stage	23.168
	SRR8316905	Silver flowering stage	13.811
	SRR8316906	Gold flowering stage	41.836
	SRR8316907	Gold flowering stage	56.829
	SRR8316908	Gold flowering stage	41.661
SRP132670	SRR6706286	Control	10.657
	SRR6706287	Light intensity 50%	9.162
	SRR6706288	Light intensity 20%	6.425
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.356
	CNS0095593	Slightly white alabastrum(diploid) 2	6.934
	CNS0095594	Slightly white alabastrum(diploid) 3	7.700
	CNS0095595	Whole white alabastrum(diploid) 2	15.528
	CNS0095596	Whole white alabastrum(diploid) 3	18.755
	CNS0095597	Whole white alabastrum(diploid) 4	17.008
	CNS0095598	Silvery flower (diploied) 1	12.601
	CNS0095599	Silvery flower (diploied) 2	8.999
	CNS0095600	Silvery flower (diploied) 3	55.565
	CNS0095601	Golden flower (diploid) 1	22.561
	CNS0095602	Golden flower (diploid) 2	59.903
	CNS0095603	Golden flower (diploid) 3	59.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.897
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.476
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.384
	CNS0095610	Silvery flower (tetraploid) 1	57.628
	CNS0095611	Silvery flower (tetraploid) 2	86.331
	CNS0095612	Silvery flower (tetraploid) 3	51.892
	CNS0095613	Golden flower (tetraploid) 1	58.711
	CNS0095614	Golden flower (tetraploid) 2	55.354
	CNS0095615	Golden flower (tetraploid) 3	221.384
CRA001975	CRR073297	Stem 1	18.239
	CRR073298	Stem 2	12.617
	CRR073299	Stem 3	14.002
	CRR073300	Leaf 1	12.565
	CRR073301	Leaf 2	13.081
	CRR073302	Leaf 3	9.298
	CRR073303	Juvenile bud 1	11.242
	CRR073304	Juvenile bud 2	10.486
	CRR073305	Juvenile bud 3	5.297
	CRR073306	Third green 1	18.043
	CRR073307	Third green 2	17.369
	CRR073308	Third green 3	15.572
	CRR073309	Second white 1	12.451
	CRR073310	Second white 2	5.665
	CRR073311	Second white 3	9.521
	CRR073312	Silver flowering 1	18.684
	CRR073313	Silver flowering 2	18.237
	CRR073314	Silver flowering 3	16.424
	CRR073315	Gold flowering 1	1.037
	CRR073316	Gold flowering 2	1.648
	CRR073317	Gold flowering 3	1.680
	CRR073318	Tawny withering 1	7.316
	CRR073319	Tawny withering 2	3.671
	CRR073320	Tawny withering 3	7.491