Detail information of GWHGAAZE022902


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG11978.10Spermidine synthase [Gossypium arboreum]
COGYP_006760780.13E-90spermidine synthase SpeE2
Swissprottr|O82147|SPDE_COFAR0Spermidine synthase
trEMBLtr|B9HVB2|B9HVB2_POPTR0Spermidine synthase family protein {ECO:0000313|EMBL:EEF01977.1}
TAIR10AT1G23820.13E-142spermidine synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8040054280404881-
GWHAAZE00000006mRNA8040054280404881-
GWHAAZE00000006exon8040469580404881-
GWHAAZE00000006exon8040373080403806-
GWHAAZE00000006exon8040263380402755-
GWHAAZE00000006exon8040231080402414-
GWHAAZE00000006exon8040206680402138-
GWHAAZE00000006exon8040189580401966-
GWHAAZE00000006exon8040158480401762-
GWHAAZE00000006exon8040117380401268-
GWHAAZE00000006exon8040054280401093-
GWHAAZE00000006CDS8040469580404881-
GWHAAZE00000006CDS8040373080403806-
GWHAAZE00000006CDS8040263380402755-
GWHAAZE00000006CDS8040231080402414-
GWHAAZE00000006CDS8040206680402138-
GWHAAZE00000006CDS8040189580401966-
GWHAAZE00000006CDS8040158480401762-
GWHAAZE00000006CDS8040117380401268-
GWHAAZE00000006CDS8040102880401093-
GWHAAZE00000006three_prime_UTR8040054280401027-
Transcript Sequence

Network for GWHGAAZE022902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17284.3Spermine_synt_N521061.60E-24
PF01564.18Spermine_synth1092741.60E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00797speE, SRM, SPE3 Metabolic pathways map01100
Cysteine and methionine metabolismmap00270
Arginine and proline metabolismmap00330
Glutathione metabolismmap00480

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.395
SRR3591706second leaf35.186
SRR3591707mature leaf46.233
SRR3591708Shoot apex35.492
SRR3591709Stem44.877
SRR3591710White floral bud65.437
SRR3591711White flower91.497
SRR3591712Green floral bud77.957
SRR3591713Yellow flower45.741
SRP173429 SRR8316895Juvenile bud stage 29.120
SRR8316896Juvenile bud stage 43.702
SRR8316897Juvenile bud stage 22.109
SRR8316894Third green stage 18.210
SRR8316900Third green stage 59.801
SRR8316901Third green stage 52.627
SRR8316898Complete white stage 22.442
SRR8316899Complete white stage 67.473
SRR8316903Complete white stage 31.059
SRR8316902Silver flowering stage41.556
SRR8316904Silver flowering stage39.648
SRR8316905Silver flowering stage11.573
SRR8316906Gold flowering stage 42.025
SRR8316907Gold flowering stage 40.928
SRR8316908Gold flowering stage 48.190
SRP132670SRR6706286Control22.176
SRR6706287Light intensity 50%26.446
SRR6706288Light intensity 20%28.844
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.593
CNS0095593Slightly white alabastrum(diploid) 256.557
CNS0095594Slightly white alabastrum(diploid) 362.306
CNS0095595Whole white alabastrum(diploid) 267.181
CNS0095596Whole white alabastrum(diploid) 360.267
CNS0095597Whole white alabastrum(diploid) 455.508
CNS0095598Silvery flower (diploied) 147.268
CNS0095599Silvery flower (diploied) 250.606
CNS0095600Silvery flower (diploied) 363.702
CNS0095601Golden flower (diploid) 136.083
CNS0095602Golden flower (diploid) 252.225
CNS0095603Golden flower (diploid) 349.055
CNS0095604Slightly white alabastrum(tetraploid) 157.550
CNS0095605Slightly white alabastrum(tetraploid) 254.440
CNS0095606Slightly white alabastrum(tetraploid) 358.587
CNS0095607Whole white alabastrum(tetraploid) 151.254
CNS0095608Whole white alabastrum(tetraploid) 249.584
CNS0095609Whole white alabastrum(tetraploid) 365.928
CNS0095610Silvery flower (tetraploid) 183.670
CNS0095611Silvery flower (tetraploid) 259.407
CNS0095612Silvery flower (tetraploid) 377.231
CNS0095613Golden flower (tetraploid) 144.763
CNS0095614Golden flower (tetraploid) 243.331
CNS0095615Golden flower (tetraploid) 344.012
CRA001975CRR073297Stem 151.261
CRR073298Stem 246.044
CRR073299Stem 352.188
CRR073300Leaf 158.134
CRR073301Leaf 254.290
CRR073302Leaf 364.948
CRR073303Juvenile bud 167.842
CRR073304Juvenile bud 264.356
CRR073305Juvenile bud 361.682
CRR073306Third green 195.294
CRR073307Third green 291.371
CRR073308Third green 380.593
CRR073309Second white 167.225
CRR073310Second white 251.832
CRR073311Second white 340.015
CRR073312Silver flowering 138.948
CRR073313Silver flowering 248.769
CRR073314Silver flowering 335.433
CRR073315Gold flowering 181.010
CRR073316Gold flowering 291.913
CRR073317Gold flowering 380.554
CRR073318Tawny withering 156.309
CRR073319Tawny withering 269.883
CRR073320Tawny withering 374.234