Detail information of GWHGAAZE022909


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU31274.10hypothetical protein MIMGU_mgv1a000087mg [Erythranthe guttata]
Swissprottr|Q9SGH2|MBD9_ARATH0Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A022QUJ3|A0A022QUJ3_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU31274.1}
TAIR10AT3G01460.10methyl-CPG-binding domain 9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8047669280501327+
GWHAAZE00000006mRNA8047669280501327+
GWHAAZE00000006exon8047669280476869+
GWHAAZE00000006exon8047763880477748+
GWHAAZE00000006exon8047918780479345+
GWHAAZE00000006exon8048565180485739+
GWHAAZE00000006exon8048610380486193+
GWHAAZE00000006exon8048820480488280+
GWHAAZE00000006exon8048881780489560+
GWHAAZE00000006exon8048966680490706+
GWHAAZE00000006exon8049093880491579+
GWHAAZE00000006exon8049227980492584+
GWHAAZE00000006exon8049363280493967+
GWHAAZE00000006exon8049817080498268+
GWHAAZE00000006exon8049845680498962+
GWHAAZE00000006exon8049907080500827+
GWHAAZE00000006exon8050098080501327+
GWHAAZE00000006five_prime_UTR8047669280476869+
GWHAAZE00000006five_prime_UTR8047763880477748+
GWHAAZE00000006five_prime_UTR8047918780479345+
GWHAAZE00000006five_prime_UTR8048565180485739+
GWHAAZE00000006five_prime_UTR8048610380486193+
GWHAAZE00000006five_prime_UTR8048820480488280+
GWHAAZE00000006five_prime_UTR8048881780489227+
GWHAAZE00000006CDS8048922880489560+
GWHAAZE00000006CDS8048966680490706+
GWHAAZE00000006CDS8049093880491579+
GWHAAZE00000006CDS8049227980492584+
GWHAAZE00000006CDS8049363280493967+
GWHAAZE00000006CDS8049817080498268+
GWHAAZE00000006CDS8049845680498962+
GWHAAZE00000006CDS8049907080500827+
GWHAAZE00000006CDS8050098080501327+
Transcript Sequence

Network for GWHGAAZE022909

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05965.15FYRC3643913.60E-05
PF00439.26Bromodomain8489062.20E-06
PF00628.30PHD96510116.10E-12
PF15613.7WSD125113389.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.605
SRR3591706second leaf4.442
SRR3591707mature leaf3.599
SRR3591708Shoot apex5.787
SRR3591709Stem5.619
SRR3591710White floral bud3.600
SRR3591711White flower4.700
SRR3591712Green floral bud4.560
SRR3591713Yellow flower3.222
SRP173429 SRR8316895Juvenile bud stage 3.116
SRR8316896Juvenile bud stage 3.895
SRR8316897Juvenile bud stage 1.583
SRR8316894Third green stage 1.933
SRR8316900Third green stage 3.747
SRR8316901Third green stage 3.048
SRR8316898Complete white stage 0.487
SRR8316899Complete white stage 3.109
SRR8316903Complete white stage 1.216
SRR8316902Silver flowering stage0.726
SRR8316904Silver flowering stage1.175
SRR8316905Silver flowering stage0.407
SRR8316906Gold flowering stage 1.549
SRR8316907Gold flowering stage 1.704
SRR8316908Gold flowering stage 1.380
SRP132670SRR6706286Control2.843
SRR6706287Light intensity 50%3.133
SRR6706288Light intensity 20%3.302
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.569
CNS0095593Slightly white alabastrum(diploid) 21.867
CNS0095594Slightly white alabastrum(diploid) 31.882
CNS0095595Whole white alabastrum(diploid) 22.078
CNS0095596Whole white alabastrum(diploid) 31.370
CNS0095597Whole white alabastrum(diploid) 42.049
CNS0095598Silvery flower (diploied) 13.785
CNS0095599Silvery flower (diploied) 22.012
CNS0095600Silvery flower (diploied) 33.628
CNS0095601Golden flower (diploid) 13.351
CNS0095602Golden flower (diploid) 25.319
CNS0095603Golden flower (diploid) 35.032
CNS0095604Slightly white alabastrum(tetraploid) 13.374
CNS0095605Slightly white alabastrum(tetraploid) 21.964
CNS0095606Slightly white alabastrum(tetraploid) 36.614
CNS0095607Whole white alabastrum(tetraploid) 12.372
CNS0095608Whole white alabastrum(tetraploid) 21.116
CNS0095609Whole white alabastrum(tetraploid) 33.284
CNS0095610Silvery flower (tetraploid) 12.826
CNS0095611Silvery flower (tetraploid) 23.624
CNS0095612Silvery flower (tetraploid) 32.381
CNS0095613Golden flower (tetraploid) 11.171
CNS0095614Golden flower (tetraploid) 22.019
CNS0095615Golden flower (tetraploid) 31.524
CRA001975CRR073297Stem 15.941
CRR073298Stem 25.591
CRR073299Stem 33.992
CRR073300Leaf 14.446
CRR073301Leaf 24.174
CRR073302Leaf 32.290
CRR073303Juvenile bud 12.142
CRR073304Juvenile bud 21.203
CRR073305Juvenile bud 33.766
CRR073306Third green 10.886
CRR073307Third green 20.391
CRR073308Third green 30.837
CRR073309Second white 10.708
CRR073310Second white 20.848
CRR073311Second white 30.983
CRR073312Silver flowering 11.083
CRR073313Silver flowering 20.757
CRR073314Silver flowering 30.514
CRR073315Gold flowering 11.372
CRR073316Gold flowering 22.747
CRR073317Gold flowering 31.173
CRR073318Tawny withering 13.545
CRR073319Tawny withering 22.042
CRR073320Tawny withering 32.822