Detail information of GWHGAAZE022916


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003631258.11.7435E-154PREDICTED: carbonic anhydrase 2 isoform X2 [Vitis vinifera]
COGYP_008546886.15E-50carbonate dehydratase
Swissprottr|P46512|CAH1_FLALI3E-135Carbonic anhydrase 1
trEMBLtr|D7TDF1|D7TDF1_VITVI7E-155Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}
TAIR10AT5G14740.21E-102carbonic anhydrase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8063573680641958-
GWHAAZE00000006mRNA8063573680641958-
GWHAAZE00000006exon8064174680641958-
GWHAAZE00000006exon8064120780641268-
GWHAAZE00000006exon8064054980640689-
GWHAAZE00000006exon8063971280639760-
GWHAAZE00000006exon8063937680639492-
GWHAAZE00000006exon8063907280639125-
GWHAAZE00000006exon8063809380638178-
GWHAAZE00000006exon8063708980637194-
GWHAAZE00000006exon8063573680636537-
GWHAAZE00000006five_prime_UTR8064174680641958-
GWHAAZE00000006five_prime_UTR8064126080641268-
GWHAAZE00000006CDS8064120780641259-
GWHAAZE00000006CDS8064054980640689-
GWHAAZE00000006CDS8063971280639760-
GWHAAZE00000006CDS8063937680639492-
GWHAAZE00000006CDS8063907280639125-
GWHAAZE00000006CDS8063809380638178-
GWHAAZE00000006CDS8063708980637194-
GWHAAZE00000006CDS8063637380636537-
GWHAAZE00000006three_prime_UTR8063573680636372-
Transcript Sequence

Network for GWHGAAZE022916

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00484.20Pro_CA832403.00E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01673cynT, can Metabolic pathways map01100
Nitrogen metabolismmap00910

Gene Ontology

GO term OntologyName
GO:0015976biological_processcarbon utilization
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.735
SRR3591706second leaf86.479
SRR3591707mature leaf145.420
SRR3591708Shoot apex25.557
SRR3591709Stem34.640
SRR3591710White floral bud90.562
SRR3591711White flower68.802
SRR3591712Green floral bud82.504
SRR3591713Yellow flower86.354
SRP173429 SRR8316895Juvenile bud stage 15.637
SRR8316896Juvenile bud stage 53.191
SRR8316897Juvenile bud stage 28.609
SRR8316894Third green stage 20.672
SRR8316900Third green stage 71.992
SRR8316901Third green stage 78.981
SRR8316898Complete white stage 36.999
SRR8316899Complete white stage 59.587
SRR8316903Complete white stage 42.944
SRR8316902Silver flowering stage44.842
SRR8316904Silver flowering stage52.582
SRR8316905Silver flowering stage29.895
SRR8316906Gold flowering stage 104.993
SRR8316907Gold flowering stage 120.725
SRR8316908Gold flowering stage 101.255
SRP132670SRR6706286Control74.373
SRR6706287Light intensity 50%66.599
SRR6706288Light intensity 20%63.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.133
CNS0095593Slightly white alabastrum(diploid) 258.895
CNS0095594Slightly white alabastrum(diploid) 382.081
CNS0095595Whole white alabastrum(diploid) 282.738
CNS0095596Whole white alabastrum(diploid) 384.131
CNS0095597Whole white alabastrum(diploid) 471.334
CNS0095598Silvery flower (diploied) 178.120
CNS0095599Silvery flower (diploied) 290.003
CNS0095600Silvery flower (diploied) 387.695
CNS0095601Golden flower (diploid) 188.896
CNS0095602Golden flower (diploid) 279.627
CNS0095603Golden flower (diploid) 376.437
CNS0095604Slightly white alabastrum(tetraploid) 196.283
CNS0095605Slightly white alabastrum(tetraploid) 296.783
CNS0095606Slightly white alabastrum(tetraploid) 327.098
CNS0095607Whole white alabastrum(tetraploid) 1122.497
CNS0095608Whole white alabastrum(tetraploid) 2134.416
CNS0095609Whole white alabastrum(tetraploid) 3140.281
CNS0095610Silvery flower (tetraploid) 1104.393
CNS0095611Silvery flower (tetraploid) 2145.551
CNS0095612Silvery flower (tetraploid) 3217.161
CNS0095613Golden flower (tetraploid) 1111.170
CNS0095614Golden flower (tetraploid) 2104.347
CNS0095615Golden flower (tetraploid) 3111.795
CRA001975CRR073297Stem 122.278
CRR073298Stem 227.994
CRR073299Stem 321.616
CRR073300Leaf 144.727
CRR073301Leaf 241.684
CRR073302Leaf 339.357
CRR073303Juvenile bud 133.435
CRR073304Juvenile bud 242.036
CRR073305Juvenile bud 326.414
CRR073306Third green 172.437
CRR073307Third green 270.093
CRR073308Third green 369.802
CRR073309Second white 183.276
CRR073310Second white 272.444
CRR073311Second white 377.058
CRR073312Silver flowering 161.260
CRR073313Silver flowering 249.838
CRR073314Silver flowering 345.806
CRR073315Gold flowering 1220.671
CRR073316Gold flowering 2248.442
CRR073317Gold flowering 3207.497
CRR073318Tawny withering 172.021
CRR073319Tawny withering 284.730
CRR073320Tawny withering 346.538