Detail information of GWHGAAZE022921


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008221836.10PREDICTED: phosphatidylinositol 3-kinase, root isoform [Prunus mume]
Swissprottr|P42347|PI3K1_SOYBN0Phosphatidylinositol 3-kinase, root isoform
trEMBLtr|A0A061E791|A0A061E791_THECC0Phosphatidylinositol 3-kinase {ECO:0000256|PIRNR:PIRNR000587}
TAIR10AT1G60490.10vacuolar protein sorting 34

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8071750780724272-
GWHAAZE00000006mRNA8071750780724272-
GWHAAZE00000006exon8072415280724272-
GWHAAZE00000006exon8072376380723859-
GWHAAZE00000006exon8072351680723612-
GWHAAZE00000006exon8072290880723066-
GWHAAZE00000006exon8072261480722823-
GWHAAZE00000006exon8072215980722337-
GWHAAZE00000006exon8072160980721756-
GWHAAZE00000006exon8072097980721074-
GWHAAZE00000006exon8072070980720844-
GWHAAZE00000006exon8072048680720607-
GWHAAZE00000006exon8072000680720200-
GWHAAZE00000006exon8071973680719906-
GWHAAZE00000006exon8071948980719626-
GWHAAZE00000006exon8071916180719315-
GWHAAZE00000006exon8071874180718884-
GWHAAZE00000006exon8071846380718610-
GWHAAZE00000006exon8071819280718360-
GWHAAZE00000006exon8071750780717700-
GWHAAZE00000006CDS8072415280724272-
GWHAAZE00000006CDS8072376380723859-
GWHAAZE00000006CDS8072351680723612-
GWHAAZE00000006CDS8072290880723066-
GWHAAZE00000006CDS8072261480722823-
GWHAAZE00000006CDS8072215980722337-
GWHAAZE00000006CDS8072160980721756-
GWHAAZE00000006CDS8072097980721074-
GWHAAZE00000006CDS8072070980720844-
GWHAAZE00000006CDS8072048680720607-
GWHAAZE00000006CDS8072000680720200-
GWHAAZE00000006CDS8071973680719906-
GWHAAZE00000006CDS8071948980719626-
GWHAAZE00000006CDS8071916180719315-
GWHAAZE00000006CDS8071874180718884-
GWHAAZE00000006CDS8071846380718610-
GWHAAZE00000006CDS8071822380718360-
GWHAAZE00000006three_prime_UTR8071819280718222-
GWHAAZE00000006three_prime_UTR8071750780717700-
Transcript Sequence

Network for GWHGAAZE022921

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00792.25PI3K_C2501931.20E-41
PF00613.21PI3Ka2794531.10E-63
PF00454.28PI3_PI4_kinase5637633.90E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00914PIK3C3, VPS34 Metabolic pathways map01100
Inositol phosphate metabolismmap00562
Apelin signaling pathwaymap04371
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136

Gene Ontology

GO term OntologyName
GO:0046854biological_processphosphatidylinositol phosphorylation
GO:0048015biological_processphosphatidylinositol-mediated signaling
GO:0016301molecular_functionkinase activity
GO:0016303molecular_function1-phosphatidylinositol-3-kinase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE022921.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.696
SRR3591706second leaf31.346
SRR3591707mature leaf39.143
SRR3591708Shoot apex40.448
SRR3591709Stem54.069
SRR3591710White floral bud51.409
SRR3591711White flower55.067
SRR3591712Green floral bud30.012
SRR3591713Yellow flower48.074
SRP173429 SRR8316895Juvenile bud stage 24.343
SRR8316896Juvenile bud stage 34.611
SRR8316897Juvenile bud stage 16.066
SRR8316894Third green stage 14.439
SRR8316900Third green stage 33.545
SRR8316901Third green stage 35.218
SRR8316898Complete white stage 22.071
SRR8316899Complete white stage 53.464
SRR8316903Complete white stage 39.157
SRR8316902Silver flowering stage24.963
SRR8316904Silver flowering stage39.069
SRR8316905Silver flowering stage18.620
SRR8316906Gold flowering stage 53.464
SRR8316907Gold flowering stage 53.793
SRR8316908Gold flowering stage 55.969
SRP132670SRR6706286Control29.420
SRR6706287Light intensity 50%32.453
SRR6706288Light intensity 20%34.028
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.639
CNS0095593Slightly white alabastrum(diploid) 223.658
CNS0095594Slightly white alabastrum(diploid) 324.781
CNS0095595Whole white alabastrum(diploid) 221.486
CNS0095596Whole white alabastrum(diploid) 317.240
CNS0095597Whole white alabastrum(diploid) 423.375
CNS0095598Silvery flower (diploied) 133.528
CNS0095599Silvery flower (diploied) 229.909
CNS0095600Silvery flower (diploied) 337.133
CNS0095601Golden flower (diploid) 131.329
CNS0095602Golden flower (diploid) 239.645
CNS0095603Golden flower (diploid) 335.902
CNS0095604Slightly white alabastrum(tetraploid) 126.892
CNS0095605Slightly white alabastrum(tetraploid) 223.078
CNS0095606Slightly white alabastrum(tetraploid) 342.411
CNS0095607Whole white alabastrum(tetraploid) 119.566
CNS0095608Whole white alabastrum(tetraploid) 216.444
CNS0095609Whole white alabastrum(tetraploid) 326.873
CNS0095610Silvery flower (tetraploid) 153.420
CNS0095611Silvery flower (tetraploid) 246.752
CNS0095612Silvery flower (tetraploid) 352.565
CNS0095613Golden flower (tetraploid) 142.216
CNS0095614Golden flower (tetraploid) 246.213
CNS0095615Golden flower (tetraploid) 355.481
CRA001975CRR073297Stem 134.264
CRR073298Stem 229.140
CRR073299Stem 317.756
CRR073300Leaf 131.914
CRR073301Leaf 225.880
CRR073302Leaf 317.782
CRR073303Juvenile bud 117.493
CRR073304Juvenile bud 212.084
CRR073305Juvenile bud 321.869
CRR073306Third green 18.635
CRR073307Third green 28.867
CRR073308Third green 310.457
CRR073309Second white 19.963
CRR073310Second white 213.257
CRR073311Second white 313.056
CRR073312Silver flowering 110.335
CRR073313Silver flowering 28.394
CRR073314Silver flowering 37.856
CRR073315Gold flowering 112.545
CRR073316Gold flowering 220.479
CRR073317Gold flowering 312.662
CRR073318Tawny withering 117.489
CRR073319Tawny withering 217.783
CRR073320Tawny withering 315.178