Gene detail

Detail information of GWHGAAZE022922

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008221837.1	0	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Prunus mume]
COG	YP_002019238.1	1E-134	naphthoate synthase
Swissprot	tr\|Q8GYN9\|MENB_ARATH	0	1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal
trEMBL	tr\|M5XQE5\|M5XQE5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23758.1}
TAIR10	AT1G60550.1	5E-145	enoyl-CoA hydratase/isomerase D

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80734889	80737992	-
GWHAAZE00000006	mRNA	80734889	80737992	-
GWHAAZE00000006	exon	80734889	80735005	-
GWHAAZE00000006	exon	80735164	80735286	-
GWHAAZE00000006	exon	80735493	80735588	-
GWHAAZE00000006	exon	80735821	80735868	-
GWHAAZE00000006	exon	80736111	80736202	-
GWHAAZE00000006	exon	80736291	80736348	-
GWHAAZE00000006	exon	80736524	80736625	-
GWHAAZE00000006	exon	80736964	80737086	-
GWHAAZE00000006	exon	80737714	80737992	-
GWHAAZE00000006	CDS	80737714	80737992	-
GWHAAZE00000006	CDS	80736964	80737086	-
GWHAAZE00000006	CDS	80736524	80736625	-
GWHAAZE00000006	CDS	80736291	80736348	-
GWHAAZE00000006	CDS	80736111	80736202	-
GWHAAZE00000006	CDS	80735821	80735868	-
GWHAAZE00000006	CDS	80735493	80735588	-
GWHAAZE00000006	CDS	80735164	80735286	-
GWHAAZE00000006	CDS	80734889	80735005	-

Transcript Sequence
>GWHTAAZE022952 ATGGCGGGGACTGTTACAGAAAAAGAGCTGACTACCATGAGAAGGAGAGTGGCCTCCGTTGCTAACCATCTCATTCCCTCTCGTTGGGCTCCCATTCTCGTTGATTCCATTTCGATTGCTTCGTCCAATTGCAGCAATGCTTCCATTAATGATAGCTATCGTCGGATACACGGCCAAGTTCCTACTACTCAACCTGTTTGGACAATTGCGTTTGATGATTCCGGAAAGGCTTTCACCGACATCATATATGAGAAAGCTGTTGGAGAAGCCATCGCCAAGATTACTATTAACAGACCAGAGAGAAGAAATGCTTTCCGGCCGCAAACAATTAAGGAACTCATTCGCGCATTTAATGATGCTAGGGATGACAGTTCTGTGGGTGTCATCATTCTCACTGGAAAGGGAACCAAGGCATTCTGTAGTGGTGGCGATCAGGCACTGAGAAGTAAAGATGGCTACGCTGATTATGAAGATTTTGGCCGCCTTAATGTTTTAGATTTACAAGTGCAGATACGACGTCTTCCAAAGCCAGTAATTGCAATGGTAGTCTCTGTTATTCCCTGTTATGCCGTTGGAGGAGGACATGTGCTTCATATGGTCTGCGATCTGACGATCGCTGCAGATAATGCTATTTTTGGACAGACAGGTCCTAAGGTTGGAAGCTTTGATGCTGGTTATGGAAGTTCAATAATGTCTCGTTTGGTTGGACCTAAAAAGGCACGTGAAATGTGGTTTCTGGCAAGGTTTTACTCTGCTTCAGAAGCAGAAGGCATGGGACTTGTTAATATGGTAGTCCCGCTAGAGAAGTTAGAACAAGAAACAGTTAAATGGTGTAGAGAGATTCTGAGAAACAGCCCAACTGCAATTCGGGTGCTCAAATCATCTCTTAACGCAGTTGATGATGGGCATGCCGGACTCCAGGAGCTTGGCGGAAATGCGACGCTCATTTTTTATGGAACTGAGGAAGGTAACGAAGGGAAGACGGCGTATATGCAACGTAGGCCCCCAGATTTCTCAAAATTTCCCCGACGACCTTAA

Network for GWHGAAZE022922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00378.21	ECH_1	89	339	1.10E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01661	menB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0009234	biological_process	menaquinone biosynthetic process
GO:0008935	molecular_function	1,4-dihydroxy-2-naphthoyl-CoA synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.199
	SRR3591706	second leaf	113.276
	SRR3591707	mature leaf	31.878
	SRR3591708	Shoot apex	68.997
	SRR3591709	Stem	44.373
	SRR3591710	White floral bud	3.860
	SRR3591711	White flower	5.865
	SRR3591712	Green floral bud	3.398
	SRR3591713	Yellow flower	1.442
SRP173429	SRR8316895	Juvenile bud stage	15.205
	SRR8316896	Juvenile bud stage	12.054
	SRR8316897	Juvenile bud stage	10.468
	SRR8316894	Third green stage	3.923
	SRR8316900	Third green stage	8.842
	SRR8316901	Third green stage	8.501
	SRR8316898	Complete white stage	2.689
	SRR8316899	Complete white stage	5.913
	SRR8316903	Complete white stage	6.009
	SRR8316902	Silver flowering stage	1.519
	SRR8316904	Silver flowering stage	3.480
	SRR8316905	Silver flowering stage	0.935
	SRR8316906	Gold flowering stage	1.107
	SRR8316907	Gold flowering stage	2.642
	SRR8316908	Gold flowering stage	1.573
SRP132670	SRR6706286	Control	8.311
	SRR6706287	Light intensity 50%	7.916
	SRR6706288	Light intensity 20%	6.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.326
	CNS0095593	Slightly white alabastrum(diploid) 2	5.163
	CNS0095594	Slightly white alabastrum(diploid) 3	7.452
	CNS0095595	Whole white alabastrum(diploid) 2	4.441
	CNS0095596	Whole white alabastrum(diploid) 3	3.354
	CNS0095597	Whole white alabastrum(diploid) 4	2.894
	CNS0095598	Silvery flower (diploied) 1	21.707
	CNS0095599	Silvery flower (diploied) 2	23.436
	CNS0095600	Silvery flower (diploied) 3	5.618
	CNS0095601	Golden flower (diploid) 1	18.032
	CNS0095602	Golden flower (diploid) 2	10.127
	CNS0095603	Golden flower (diploid) 3	11.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.650
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.611
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.520
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.046
	CNS0095610	Silvery flower (tetraploid) 1	3.792
	CNS0095611	Silvery flower (tetraploid) 2	3.965
	CNS0095612	Silvery flower (tetraploid) 3	4.879
	CNS0095613	Golden flower (tetraploid) 1	0.739
	CNS0095614	Golden flower (tetraploid) 2	5.006
	CNS0095615	Golden flower (tetraploid) 3	3.357
CRA001975	CRR073297	Stem 1	29.839
	CRR073298	Stem 2	21.450
	CRR073299	Stem 3	29.590
	CRR073300	Leaf 1	4.959
	CRR073301	Leaf 2	9.786
	CRR073302	Leaf 3	6.852
	CRR073303	Juvenile bud 1	3.886
	CRR073304	Juvenile bud 2	2.287
	CRR073305	Juvenile bud 3	5.637
	CRR073306	Third green 1	3.544
	CRR073307	Third green 2	3.813
	CRR073308	Third green 3	4.748
	CRR073309	Second white 1	2.027
	CRR073310	Second white 2	2.271
	CRR073311	Second white 3	0.490
	CRR073312	Silver flowering 1	0.068
	CRR073313	Silver flowering 2	0.568
	CRR073314	Silver flowering 3	1.075
	CRR073315	Gold flowering 1	148.948
	CRR073316	Gold flowering 2	173.451
	CRR073317	Gold flowering 3	138.708
	CRR073318	Tawny withering 1	33.775
	CRR073319	Tawny withering 2	35.073
	CRR073320	Tawny withering 3	26.138