Detail information of GWHGAAZE022928


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011003162.12.4499E-109PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Populus euphratica]
COGYP_004104012.18E-37ubiquitin
Swissprottr|P62981|RS27A_SOLTU1E-10940S ribosomal protein S27a (Precursor)
trEMBLtr|A0A058ZUJ2|A0A058ZUJ2_EUCGR1E-109Uncharacterized protein {ECO:0000313|EMBL:KCW45422.1}
TAIR10AT2G47110.23E-68ubiquitin 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8078328080783750-
GWHAAZE00000006mRNA8078328080783750-
GWHAAZE00000006exon8078328080783750-
GWHAAZE00000006CDS8078328080783750-
Transcript Sequence

Network for GWHGAAZE022928

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00240.24ubiquitin3741.50E-33
PF01599.20Ribosomal_S271021472.30E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02977RP-S27Ae, RPS27A, UBA80 Ribosome map03010
Ubiquitin mediated proteolysismap04120
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf521.640
SRR3591706second leaf260.698
SRR3591707mature leaf138.764
SRR3591708Shoot apex593.248
SRR3591709Stem291.365
SRR3591710White floral bud256.814
SRR3591711White flower365.215
SRR3591712Green floral bud451.148
SRR3591713Yellow flower205.774
SRP173429 SRR8316895Juvenile bud stage 199.175
SRR8316896Juvenile bud stage 264.521
SRR8316897Juvenile bud stage 138.569
SRR8316894Third green stage 92.471
SRR8316900Third green stage 359.769
SRR8316901Third green stage 386.037
SRR8316898Complete white stage 65.294
SRR8316899Complete white stage 324.499
SRR8316903Complete white stage 104.170
SRR8316902Silver flowering stage75.418
SRR8316904Silver flowering stage71.001
SRR8316905Silver flowering stage35.954
SRR8316906Gold flowering stage 97.100
SRR8316907Gold flowering stage 111.956
SRR8316908Gold flowering stage 139.509
SRP132670SRR6706286Control338.917
SRR6706287Light intensity 50%322.222
SRR6706288Light intensity 20%343.206
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1409.839
CNS0095593Slightly white alabastrum(diploid) 2476.108
CNS0095594Slightly white alabastrum(diploid) 3402.312
CNS0095595Whole white alabastrum(diploid) 2347.134
CNS0095596Whole white alabastrum(diploid) 3380.352
CNS0095597Whole white alabastrum(diploid) 4265.095
CNS0095598Silvery flower (diploied) 1231.942
CNS0095599Silvery flower (diploied) 2228.920
CNS0095600Silvery flower (diploied) 3154.747
CNS0095601Golden flower (diploid) 1169.483
CNS0095602Golden flower (diploid) 2142.672
CNS0095603Golden flower (diploid) 3141.432
CNS0095604Slightly white alabastrum(tetraploid) 1343.537
CNS0095605Slightly white alabastrum(tetraploid) 2380.523
CNS0095606Slightly white alabastrum(tetraploid) 3441.379
CNS0095607Whole white alabastrum(tetraploid) 1200.892
CNS0095608Whole white alabastrum(tetraploid) 2176.454
CNS0095609Whole white alabastrum(tetraploid) 3305.573
CNS0095610Silvery flower (tetraploid) 1157.548
CNS0095611Silvery flower (tetraploid) 2122.207
CNS0095612Silvery flower (tetraploid) 394.932
CNS0095613Golden flower (tetraploid) 181.718
CNS0095614Golden flower (tetraploid) 2127.287
CNS0095615Golden flower (tetraploid) 357.413
CRA001975CRR073297Stem 1465.022
CRR073298Stem 2481.403
CRR073299Stem 3596.043
CRR073300Leaf 1432.185
CRR073301Leaf 2532.038
CRR073302Leaf 3706.742
CRR073303Juvenile bud 1567.853
CRR073304Juvenile bud 2409.374
CRR073305Juvenile bud 3456.763
CRR073306Third green 172.577
CRR073307Third green 2107.501
CRR073308Third green 397.991
CRR073309Second white 1103.195
CRR073310Second white 275.344
CRR073311Second white 345.495
CRR073312Silver flowering 175.120
CRR073313Silver flowering 2121.113
CRR073314Silver flowering 389.637
CRR073315Gold flowering 1277.233
CRR073316Gold flowering 2267.186
CRR073317Gold flowering 3296.308
CRR073318Tawny withering 1607.844
CRR073319Tawny withering 2504.332
CRR073320Tawny withering 3564.473