Gene detail

Detail information of GWHGAAZE022934

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596636.1	9.1303E-159	PREDICTED: F-box/kelch-repeat protein At1g23390 [Nicotiana tomentosiformis]
COG	YP_005370756.1	0.000003	kelch motif-containing protein
Swissprot	tr\|Q9LDE3\|FBK9_ARATH	9E-95	F-box/kelch-repeat protein At1g23390
trEMBL	tr\|F6HHS4\|F6HHS4_VITVI	7E-159	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51801.1}
TAIR10	AT1G23390.1	3E-63	Kelch repeat-containing F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80846953	80848104	+
GWHAAZE00000006	mRNA	80846953	80848104	+
GWHAAZE00000006	exon	80846953	80848104	+
GWHAAZE00000006	CDS	80846953	80848104	+

Transcript Sequence
>GWHTAAZE022964 ATGATTGCATTTAGTAAAACTACGGTGGCAAGAGCGGACGAGCAACAAGTAGAAGCAACCGAAATCCATGGAGACACGTTAGAGGCCATCCTCAGTCACGTGCCACTGATCGACCTTGTGCCAGCCTCTCAGGTGTCCAGGTCTTGGAATCGAGCCGTCTCTTCCTCCCTTCACCACTTCAACCGGCTCAAGCCGTGGCTCATCATCTACATCCAGAGCTCCCGCCCCCCTTACTCCACCACGACGCGCGCCTATGATCCACGCTCGCGCGTCTGGATCGACATCAACCAAAACCTCATCCGCTACGTCTCCGCCCTCCGCTCCTCCCACTCCAACCTCCTCTACATGCTCTCCCCTTCTAAACTCTCCTTCTCCTTCGATCCCCTACACCTCGAGTGGCACCAAGCCGAAGCGCCGGTTGTTTGGCGTACGGATCCGATCGTAGCAGTCGTCGGCCGCCGCATCGTCGTCGCCGGCGGCACCTGCGACTTCGAAGAGGATCCACTAGCCGTCGAGATCTACGACATCGTTTCCCGCAAGTGGACCATATCCGAATCCATGCCGGCCGTTCTCAAGGACTCCTCAGCTTCTACGTGGCTATCGATCGCCACAAACGATCGGATCCTCTTCGTCAGCGAGAAGCACACCGGTGTAACTCACTCATTCGATCCGGAGAGGATGAATTGGCACGGTCCGTACGATCTACGTCCAAATCCGCGGATTTTATACTCCTTTATCGGATTCTTAGATGACCGTCTGATTTTAATCGGACTGATCGGAGACGTGGACCAAGTGGAGGGAGTGAAGCTTTGGGAAGTGGATTGTGAATCGTTCGATTGTGAAGAGATTGGAGAGATGCCAGTGGAGTTTGTTAAGAAGCTAGAGAGCGAAATGTTTCAATTATCGTCAATAGGTGTATGTATGGCTGGAAACACGGTGTATATGTACAATCCAATGGAGGTGGAAGAGGTTTTAATATGCGAGTTTGTTAATGGAGGATGTAGGTGGCGGATTGTAGAGAACAATATTATTGGGAGCGGGGATAGAAATCCTACGGAGAGGTTCGTGTTGACTTGTTCAAAGGTAGGGATGATGGAATTGCAGAGAGCGATGAGGTCCGATCATCGGAAATTTGTAGTAAATTATCATTGA

Network for GWHGAAZE022934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	27	60	3.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.510
	SRR3591706	second leaf	14.446
	SRR3591707	mature leaf	16.875
	SRR3591708	Shoot apex	15.047
	SRR3591709	Stem	12.426
	SRR3591710	White floral bud	29.740
	SRR3591711	White flower	31.564
	SRR3591712	Green floral bud	28.901
	SRR3591713	Yellow flower	24.821
SRP173429	SRR8316895	Juvenile bud stage	20.055
	SRR8316896	Juvenile bud stage	43.013
	SRR8316897	Juvenile bud stage	10.861
	SRR8316894	Third green stage	9.689
	SRR8316900	Third green stage	31.561
	SRR8316901	Third green stage	40.975
	SRR8316898	Complete white stage	17.874
	SRR8316899	Complete white stage	50.041
	SRR8316903	Complete white stage	25.407
	SRR8316902	Silver flowering stage	15.139
	SRR8316904	Silver flowering stage	16.877
	SRR8316905	Silver flowering stage	12.165
	SRR8316906	Gold flowering stage	25.192
	SRR8316907	Gold flowering stage	38.742
	SRR8316908	Gold flowering stage	26.505
SRP132670	SRR6706286	Control	26.057
	SRR6706287	Light intensity 50%	23.698
	SRR6706288	Light intensity 20%	24.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.579
	CNS0095593	Slightly white alabastrum(diploid) 2	22.916
	CNS0095594	Slightly white alabastrum(diploid) 3	20.731
	CNS0095595	Whole white alabastrum(diploid) 2	23.150
	CNS0095596	Whole white alabastrum(diploid) 3	22.042
	CNS0095597	Whole white alabastrum(diploid) 4	22.765
	CNS0095598	Silvery flower (diploied) 1	25.593
	CNS0095599	Silvery flower (diploied) 2	37.222
	CNS0095600	Silvery flower (diploied) 3	57.352
	CNS0095601	Golden flower (diploid) 1	57.754
	CNS0095602	Golden flower (diploid) 2	61.402
	CNS0095603	Golden flower (diploid) 3	57.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.669
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.108
	CNS0095610	Silvery flower (tetraploid) 1	42.850
	CNS0095611	Silvery flower (tetraploid) 2	53.496
	CNS0095612	Silvery flower (tetraploid) 3	46.489
	CNS0095613	Golden flower (tetraploid) 1	30.743
	CNS0095614	Golden flower (tetraploid) 2	38.499
	CNS0095615	Golden flower (tetraploid) 3	36.440
CRA001975	CRR073297	Stem 1	34.381
	CRR073298	Stem 2	35.044
	CRR073299	Stem 3	48.477
	CRR073300	Leaf 1	30.328
	CRR073301	Leaf 2	35.913
	CRR073302	Leaf 3	34.365
	CRR073303	Juvenile bud 1	40.184
	CRR073304	Juvenile bud 2	37.661
	CRR073305	Juvenile bud 3	44.276
	CRR073306	Third green 1	28.407
	CRR073307	Third green 2	20.743
	CRR073308	Third green 3	19.942
	CRR073309	Second white 1	15.578
	CRR073310	Second white 2	10.559
	CRR073311	Second white 3	10.785
	CRR073312	Silver flowering 1	6.919
	CRR073313	Silver flowering 2	5.324
	CRR073314	Silver flowering 3	7.840
	CRR073315	Gold flowering 1	32.679
	CRR073316	Gold flowering 2	37.454
	CRR073317	Gold flowering 3	43.914
	CRR073318	Tawny withering 1	35.930
	CRR073319	Tawny withering 2	31.906
	CRR073320	Tawny withering 3	28.515