Gene detail

Detail information of GWHGAAZE022947

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009623840.1	0	PREDICTED: L-tryptophan--pyruvate aminotransferase 1-like [Nicotiana tomentosiformis]
COG	YP_002334567.1	0.0000003	aspartate aminotransferase
Swissprot	tr\|Q9S7N2\|TAA1_ARATH	6E-159	L-tryptophan--pyruvate aminotransferase 1
trEMBL	tr\|K4C041\|K4C041_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g031600.1.1}
TAIR10	AT1G70560.1	1E-127	tryptophan aminotransferase of Arabidopsis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81067041	81070084	+
GWHAAZE00000006	mRNA	81067041	81070084	+
GWHAAZE00000006	exon	81067041	81067117	+
GWHAAZE00000006	exon	81067448	81067751	+
GWHAAZE00000006	exon	81069058	81069341	+
GWHAAZE00000006	exon	81069435	81069736	+
GWHAAZE00000006	exon	81069848	81070084	+
GWHAAZE00000006	CDS	81067041	81067117	+
GWHAAZE00000006	CDS	81067448	81067751	+
GWHAAZE00000006	CDS	81069058	81069341	+
GWHAAZE00000006	CDS	81069435	81069736	+
GWHAAZE00000006	CDS	81069848	81070035	+
GWHAAZE00000006	three_prime_UTR	81070036	81070084	+

Transcript Sequence
>GWHTAAZE022977 ATGTGCGGCACAGATAACGTCAAACGGTCAGCCTCCTCCTCTGCTATTGCTTCCGATGCAGTCATCAATCTCGATCATGGAGATCCGATGATTTTCGAGTCATATTGGAGAAAGATGGGAGACAAGTGTAGGGTGGTCATCGAGGGATATGAGTCGTTAAGCTACTTCGCGGATGTGAAAAACTTGTGCTGGTATATGGAGCCAAAACTGGAGGAAGAGATCAGGAGGCTGCATCATACGGTGGGGAATGCGGTGGTGGAAGATCATTATGTGGTGGTGGGAACAGGTTCCAGCCAGCTTATTCAGGCAGCGCTGTACGCTCTCTCTCCACCTGATCAGATTCACCCCAACAGCATCGTCTCTGCCGTTCCTTATTACTCGTCGTACTTAGAGATTGTAGAAATTTTGAGATCTGGGCTCTACAAATGGGCAGGGGACGCGCGTACCTTCGACAAAGAAGGACCCTACATCGAGCTGATCACTTCCCCAAACAACCCTGACGGGATTATACGAGAAGCCACTGTTAACCGAGGCGATCAGGGGAAGCTTGTACATGACCTTGCCTACTATTGGCCACAATACACTCCCATAACAAGTCCGGCTAATTTTGATATGATGCTATTCACAGCTTCCAAATGCACTGGACATGCTGGATCCAGAATTGGGTGGGCTCTTGTTAAGGACAAAGAAGTCGCTAAAAGAATGATTAAATTCATTGAGGTCAACACAATTGGCGTATCGAAAGAATCTCAGCTCAGAACTGCAAAAATCCTCGGACTGGTCTCCGATAGCTGCCTACATGTCGACTCACCGGAAATCGAGAACTTCTTCGAATATGGTCAACGCATCATGGCTGAGAGGTGGAAGAGATTGAGAGATGTTGTGAAGCGAAACGAGGTCTTCAGTCTACCCAAATACCCAATCATGTACTGCCACTTCACCCGCGAGTACACCGAAACTCATCCTGCGTTTGCATGGATGAAGTGCAAAGAGAAGATAGAGGATTGCGAGAAGTTTTTGAGGGAGAAAAAGATTGCAACAAGAAGCGGAAGGCGGTTCGGGACAGATCCCCATCATGTTAGGGTTAGTATGCTGAACAAAGAAGAGGAATTTGAGATGTTTCTAGAGAGATTGAAGGATATTCAAGTGGATTAGAGTCAATAATGCATGGGGGATTAATCTATAGCTAGCTAGCTAGCTATAG

Network for GWHGAAZE022947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04864.14	Alliinase_C	22	381	2.00E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16903	TAA1	Metabolic pathways	map01100
K16903	TAA1	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0016846	molecular_function	carbon-sulfur lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.303
	SRR3591706	second leaf	0.229
	SRR3591707	mature leaf	0.138
	SRR3591708	Shoot apex	0.365
	SRR3591709	Stem	0.326
	SRR3591710	White floral bud	1.214
	SRR3591711	White flower	0.474
	SRR3591712	Green floral bud	3.708
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	28.554
	SRR8316896	Juvenile bud stage	85.200
	SRR8316897	Juvenile bud stage	33.936
	SRR8316894	Third green stage	13.526
	SRR8316900	Third green stage	6.741
	SRR8316901	Third green stage	9.730
	SRR8316898	Complete white stage	0.111
	SRR8316899	Complete white stage	0.245
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.205
	SRR6706287	Light intensity 50%	1.931
	SRR6706288	Light intensity 20%	1.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.977
	CNS0095593	Slightly white alabastrum(diploid) 2	10.621
	CNS0095594	Slightly white alabastrum(diploid) 3	43.916
	CNS0095595	Whole white alabastrum(diploid) 2	9.849
	CNS0095596	Whole white alabastrum(diploid) 3	10.125
	CNS0095597	Whole white alabastrum(diploid) 4	8.499
	CNS0095598	Silvery flower (diploied) 1	0.064
	CNS0095599	Silvery flower (diploied) 2	0.188
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.062
	CNS0095602	Golden flower (diploid) 2	0.265
	CNS0095603	Golden flower (diploid) 3	0.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.097
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.420
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.075
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.361
	CNS0095612	Silvery flower (tetraploid) 3	0.095
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	29.729
	CRR073298	Stem 2	32.957
	CRR073299	Stem 3	30.576
	CRR073300	Leaf 1	3.476
	CRR073301	Leaf 2	6.006
	CRR073302	Leaf 3	5.469
	CRR073303	Juvenile bud 1	0.944
	CRR073304	Juvenile bud 2	0.701
	CRR073305	Juvenile bud 3	0.048
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.257
	CRR073308	Third green 3	0.195
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.102
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.458
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.168
	CRR073315	Gold flowering 1	0.037
	CRR073316	Gold flowering 2	0.005
	CRR073317	Gold flowering 3	0.132
	CRR073318	Tawny withering 1	0.667
	CRR073319	Tawny withering 2	0.144
	CRR073320	Tawny withering 3	0.429