Gene detail

Detail information of GWHGAAZE022948

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010251124.1	PREDICTED: AP-1 complex subunit mu-2 [Nelumbo nucifera]
Swissprot	tr\|O22715\|AP1M2_ARATH	AP-1 complex subunit mu-2
trEMBL	tr\|D7SYS4\|D7SYS4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23375.3}
TAIR10	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81081997	81086372	-
GWHAAZE00000006	mRNA	81081997	81086372	-
GWHAAZE00000006	exon	81081997	81082095	-
GWHAAZE00000006	exon	81083475	81083597	-
GWHAAZE00000006	exon	81083754	81083895	-
GWHAAZE00000006	exon	81084009	81084106	-
GWHAAZE00000006	exon	81084256	81084352	-
GWHAAZE00000006	exon	81084512	81084619	-
GWHAAZE00000006	exon	81084985	81085088	-
GWHAAZE00000006	exon	81085174	81085350	-
GWHAAZE00000006	exon	81085456	81085518	-
GWHAAZE00000006	exon	81085667	81085813	-
GWHAAZE00000006	exon	81086177	81086372	-
GWHAAZE00000006	five_prime_UTR	81086306	81086372	-
GWHAAZE00000006	CDS	81086177	81086305	-
GWHAAZE00000006	CDS	81085667	81085813	-
GWHAAZE00000006	CDS	81085456	81085518	-
GWHAAZE00000006	CDS	81085174	81085350	-
GWHAAZE00000006	CDS	81084985	81085088	-
GWHAAZE00000006	CDS	81084512	81084619	-
GWHAAZE00000006	CDS	81084256	81084352	-
GWHAAZE00000006	CDS	81084009	81084106	-
GWHAAZE00000006	CDS	81083754	81083895	-
GWHAAZE00000006	CDS	81083475	81083597	-
GWHAAZE00000006	CDS	81081997	81082095	-

Transcript Sequence
>GWHTAAZE022978 CCTCATCATTCTCACGTCTATAGCGATCGATCTGACTTGTGATCGGAATACAAGGAATTAGGAATTGATGGCGGGAGCGGCCTCCGCGCTATTCCTTCTGGACATCAAGGGCCGCGTTCTGGTGTGGCGCGACTACCGTGGCGACGTCTCTGCCGTTCAGGCCGAGCGCTTTTTCACCAAGTTCCTCGAGAAAGAGGGCGATCCAGAGTCTCAAAATCCCGTTGTGTATGACAGTGGAGTCACGTATATGTTTATACAACATAACAATGTATATTTGATGACTGCATCGAGACAGAACTGCAATGCCGCTAGCCTTCTTCTATTTCTACACAGTGTTGTCGATGTTTTTAAGCATTATTTTGAAGAGTTGGAAGAGGAATCACTTAGAGATAATTTTGTTGTTGTGTACGAATTACTTGATGAAATGATGGACTTCGGTTATCCTCAATATACTGAAGCAAAAATTCTTAGTGAGTTTATCAAGACCGATGCTTACAGAATGGAAGTCACACAGAGGCCTCCCATGGCTGTGACAAATGCAGTTTCCTGGCGCAGTGAAGGGATACGTTACAAGAAGAATGAAGTGTTTTTAGATGTCGTGGAGAGTGTTAATATACTTGTCAACAGCAATGGTCAAATAATTAGGTCAGAAGTTGTTGGGGCATTGAAGATGCGGACATACTTGAGTGGTATGCCTGAGTGTAAACTTGGCTTAAATGATAGAGTTCTATTGGAGGCACAAGGACGATCTACCAAAGGAAAAGCCATTGACTTGGATGACATAAAGTTCCATCAGTGCGTTCGTTTGGCTCGATTTGAAAATGATCGGACTATATCTTTTATACCTCCCGATGGGTCTTTTGATCTCATGACATATAGACTCAGCACTCAGGTAAAGCCTCTGATATGGGTGGAAGCTCAAGTTGAAAGACATTCAAGAAGTCGTATGGAAATTATGGTAAAAGCCCGGAGCCAGTTCAAGGAGCGCAGCACTGCAACAAATGTAGAAATTGAGTTGCCTGTGCCATCTGATGCCACCAATCCAAATGTCCGGACATCAATGGGATCTGCTGCTTATGCACCTGAAAATGATGCATTGATATGGAAAATAAAATCTTTTCCAGGTGGTAAGGAGTATATGTTAAGAGCAGAATTTACTCTTCCCAGTATAACAGCTGAAGAGGCAGTTCCTGAAAGAAAGGCTCCCATACGTGTGAAGTTTGAGATACCATATTTTACGGTGTCAGGGATACAGGTTCGTTACCTGAAGATCATTGAGAAGAGTGGCTACCAGGCTCTTCCGTGGGTGAGATATATAACAATGGCTGGGGAGTATGAACTAAGACTAATGTGA

Network for GWHGAAZE022948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0242

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.21	Clat_adaptor_s	7	131	3.80E-06
PF00928.22	Adap_comp_sub	159	426	4.40E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12393	AP1M	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	105.841
	SRR3591706	second leaf	36.689
	SRR3591707	mature leaf	30.935
	SRR3591708	Shoot apex	57.065
	SRR3591709	Stem	83.132
	SRR3591710	White floral bud	82.557
	SRR3591711	White flower	86.781
	SRR3591712	Green floral bud	70.324
	SRR3591713	Yellow flower	83.156
SRP173429	SRR8316895	Juvenile bud stage	35.355
	SRR8316896	Juvenile bud stage	50.346
	SRR8316897	Juvenile bud stage	27.788
	SRR8316894	Third green stage	26.276
	SRR8316900	Third green stage	84.389
	SRR8316901	Third green stage	73.195
	SRR8316898	Complete white stage	51.092
	SRR8316899	Complete white stage	114.705
	SRR8316903	Complete white stage	69.251
	SRR8316902	Silver flowering stage	43.530
	SRR8316904	Silver flowering stage	60.679
	SRR8316905	Silver flowering stage	28.634
	SRR8316906	Gold flowering stage	90.173
	SRR8316907	Gold flowering stage	89.614
	SRR8316908	Gold flowering stage	88.660
SRP132670	SRR6706286	Control	67.735
	SRR6706287	Light intensity 50%	67.106
	SRR6706288	Light intensity 20%	73.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.031
	CNS0095593	Slightly white alabastrum(diploid) 2	43.852
	CNS0095594	Slightly white alabastrum(diploid) 3	38.851
	CNS0095595	Whole white alabastrum(diploid) 2	46.717
	CNS0095596	Whole white alabastrum(diploid) 3	40.058
	CNS0095597	Whole white alabastrum(diploid) 4	43.382
	CNS0095598	Silvery flower (diploied) 1	42.395
	CNS0095599	Silvery flower (diploied) 2	44.055
	CNS0095600	Silvery flower (diploied) 3	83.116
	CNS0095601	Golden flower (diploid) 1	38.324
	CNS0095602	Golden flower (diploid) 2	69.585
	CNS0095603	Golden flower (diploid) 3	67.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.439
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.119
	CNS0095610	Silvery flower (tetraploid) 1	76.282
	CNS0095611	Silvery flower (tetraploid) 2	67.865
	CNS0095612	Silvery flower (tetraploid) 3	66.072
	CNS0095613	Golden flower (tetraploid) 1	46.648
	CNS0095614	Golden flower (tetraploid) 2	65.303
	CNS0095615	Golden flower (tetraploid) 3	57.648
CRA001975	CRR073297	Stem 1	40.584
	CRR073298	Stem 2	38.955
	CRR073299	Stem 3	39.018
	CRR073300	Leaf 1	49.778
	CRR073301	Leaf 2	48.463
	CRR073302	Leaf 3	47.585
	CRR073303	Juvenile bud 1	59.019
	CRR073304	Juvenile bud 2	55.850
	CRR073305	Juvenile bud 3	56.873
	CRR073306	Third green 1	38.608
	CRR073307	Third green 2	34.331
	CRR073308	Third green 3	37.646
	CRR073309	Second white 1	30.828
	CRR073310	Second white 2	39.683
	CRR073311	Second white 3	32.364
	CRR073312	Silver flowering 1	29.864
	CRR073313	Silver flowering 2	24.792
	CRR073314	Silver flowering 3	30.373
	CRR073315	Gold flowering 1	20.718
	CRR073316	Gold flowering 2	28.128
	CRR073317	Gold flowering 3	15.971
	CRR073318	Tawny withering 1	49.715
	CRR073319	Tawny withering 2	34.846
	CRR073320	Tawny withering 3	55.610