Gene detail

Detail information of GWHGAAZE022964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251060.1	4.4365E-154	PREDICTED: putative glucose-6-phosphate 1-epimerase [Nelumbo nucifera]
COG	YP_002355684.1	2E-46	aldose 1-epimerase
Swissprot	tr\|Q40784\|AAPC_CENCI	2E-125	Putative glucose-6-phosphate 1-epimerase
trEMBL	tr\|A0A068U1K6\|A0A068U1K6_COFCA	8E-152	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02054.1}
TAIR10	AT5G14500.1	5E-116	aldose 1-epimerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81247063	81253284	+
GWHAAZE00000006	mRNA	81247063	81253284	+
GWHAAZE00000006	exon	81247063	81247131	+
GWHAAZE00000006	exon	81247394	81247480	+
GWHAAZE00000006	exon	81251585	81251659	+
GWHAAZE00000006	exon	81251752	81251808	+
GWHAAZE00000006	exon	81251901	81252058	+
GWHAAZE00000006	exon	81252157	81252288	+
GWHAAZE00000006	exon	81252531	81252633	+
GWHAAZE00000006	exon	81252788	81252887	+
GWHAAZE00000006	exon	81253012	81253284	+
GWHAAZE00000006	CDS	81247063	81247131	+
GWHAAZE00000006	CDS	81247394	81247480	+
GWHAAZE00000006	CDS	81251585	81251659	+
GWHAAZE00000006	CDS	81251752	81251808	+
GWHAAZE00000006	CDS	81251901	81252058	+
GWHAAZE00000006	CDS	81252157	81252288	+
GWHAAZE00000006	CDS	81252531	81252633	+
GWHAAZE00000006	CDS	81252788	81252887	+
GWHAAZE00000006	CDS	81253012	81253229	+
GWHAAZE00000006	three_prime_UTR	81253230	81253284	+

Transcript Sequence
>GWHTAAZE022994 ATCTCTCCAATTAGAATAGGGGGTGGGTCGGACTCGAAATCGTTTGTGAAAAAGCAAGTAAAAGCAAAGAAGCAGATGCCCTTACTTGATCTCTTTAGCGATCCCAACGGCAATCCCCGCGTCTTGTTATCCGACCCCGGTGGTTCTTCTGCCGAGGTACTTCTCTATGGAGGGCAAGTTGTGTCATGGAAGAATGAACATGGAGAAGAACTTCTTTTCATGAGCAGAAAGGCTATCAGGAAATCTGCTAAAGCAATCGAGGGAGGAATATCATCTTATTTTCCACAGTTTGGCAATTCCGGGTCATTGGAGCAGCATGGATCTGCTAGGAACATAAAATGGACATTAGATAATTGCCCTTTTCATCTTGCTTCCGATGGGAACCCGTCATCAGTGGATCTTATCTTTAAGCCCAACGGAAATGGTATAAAAATGTGGGCACACAGCTTTGAATTGCGGCTTCGTATTTCTCTTGGTCCGGGCAAGCTGACCTTGATCTCTAATGTGAGGAACACCGACATCAAGTCCTTTTCGTTTACATTTGCTATGCGGAATTACTTGTCAGTATCTGACATCAGTGAAGTGCGGGTTGAAGGCTTGGAGACACTTGACTACTTAGATAATTTGCGGCACAGCAAGAGGTTTACTGAGCAAGCGGATGCATTAACATTTGATGGCGAGGTTGATCGCTATTATTTGAGGACACCAACAAACATTGCCATTATAGACCATGAAAAGAAGAGAACCTTTGTAGTTCACAAAGAACACTTCCCTGATGCTGTTTTATGGAATCCGTGGGACAAGGGTGCTAAGACACTCTCGGATTTTGGAGACGAGGACTACAAGATTATGTTGTCAGTAGATTCAGCCATCCTTGAAAAGCCAATTACTCTAAAACCATCTGAAGAGTGGAAAGGCTGTCAAGAGCTTTCCACCGTCTCTTCAAGTTATTGTAGCGGGCAATTGGATCCCCAAATGGTCCTTCATGGCTTTAGTTGATTACGGGCAATGTGGAGTTTACAGAGCTTACTTTCATTGTACATATAATCTCTCT

Network for GWHGAAZE022964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	40	308	3.20E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01792	E5.1.3.15	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.203
	SRR3591706	second leaf	6.867
	SRR3591707	mature leaf	2.148
	SRR3591708	Shoot apex	8.881
	SRR3591709	Stem	11.099
	SRR3591710	White floral bud	2.130
	SRR3591711	White flower	1.290
	SRR3591712	Green floral bud	3.563
	SRR3591713	Yellow flower	1.226
SRP173429	SRR8316895	Juvenile bud stage	1.801
	SRR8316896	Juvenile bud stage	2.164
	SRR8316897	Juvenile bud stage	1.180
	SRR8316894	Third green stage	1.124
	SRR8316900	Third green stage	3.674
	SRR8316901	Third green stage	4.240
	SRR8316898	Complete white stage	1.023
	SRR8316899	Complete white stage	4.687
	SRR8316903	Complete white stage	1.645
	SRR8316902	Silver flowering stage	0.472
	SRR8316904	Silver flowering stage	0.515
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	0.535
	SRR8316907	Gold flowering stage	0.983
	SRR8316908	Gold flowering stage	0.658
SRP132670	SRR6706286	Control	2.482
	SRR6706287	Light intensity 50%	2.369
	SRR6706288	Light intensity 20%	2.749
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.429
	CNS0095593	Slightly white alabastrum(diploid) 2	8.111
	CNS0095594	Slightly white alabastrum(diploid) 3	5.406
	CNS0095595	Whole white alabastrum(diploid) 2	4.243
	CNS0095596	Whole white alabastrum(diploid) 3	2.194
	CNS0095597	Whole white alabastrum(diploid) 4	3.488
	CNS0095598	Silvery flower (diploied) 1	1.545
	CNS0095599	Silvery flower (diploied) 2	1.442
	CNS0095600	Silvery flower (diploied) 3	1.126
	CNS0095601	Golden flower (diploid) 1	1.878
	CNS0095602	Golden flower (diploid) 2	1.684
	CNS0095603	Golden flower (diploid) 3	1.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.878
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.867
	CNS0095610	Silvery flower (tetraploid) 1	0.317
	CNS0095611	Silvery flower (tetraploid) 2	0.781
	CNS0095612	Silvery flower (tetraploid) 3	0.524
	CNS0095613	Golden flower (tetraploid) 1	0.350
	CNS0095614	Golden flower (tetraploid) 2	0.802
	CNS0095615	Golden flower (tetraploid) 3	0.248
CRA001975	CRR073297	Stem 1	3.774
	CRR073298	Stem 2	1.662
	CRR073299	Stem 3	2.412
	CRR073300	Leaf 1	5.160
	CRR073301	Leaf 2	4.516
	CRR073302	Leaf 3	3.896
	CRR073303	Juvenile bud 1	3.901
	CRR073304	Juvenile bud 2	5.461
	CRR073305	Juvenile bud 3	4.597
	CRR073306	Third green 1	1.754
	CRR073307	Third green 2	1.027
	CRR073308	Third green 3	2.323
	CRR073309	Second white 1	0.381
	CRR073310	Second white 2	0.302
	CRR073311	Second white 3	0.380
	CRR073312	Silver flowering 1	1.504
	CRR073313	Silver flowering 2	1.227
	CRR073314	Silver flowering 3	0.284
	CRR073315	Gold flowering 1	2.894
	CRR073316	Gold flowering 2	1.319
	CRR073317	Gold flowering 3	1.500
	CRR073318	Tawny withering 1	10.215
	CRR073319	Tawny withering 2	6.237
	CRR073320	Tawny withering 3	6.930