Gene detail

Detail information of GWHGAAZE022980

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009629541.1	0	PREDICTED: nucleoporin GLE1 isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q0WPZ7\|GLE1_ARATH	9E-108	Protein GLE1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|K4BYA0\|K4BYA0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g013790.2.1}
TAIR10	AT1G13120.1	7E-87	embryo defective 1745

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81542751	81547939	-
GWHAAZE00000006	mRNA	81542751	81547939	-
GWHAAZE00000006	exon	81547833	81547939	-
GWHAAZE00000006	exon	81547232	81547403	-
GWHAAZE00000006	exon	81546390	81546573	-
GWHAAZE00000006	exon	81545703	81545812	-
GWHAAZE00000006	exon	81545481	81545551	-
GWHAAZE00000006	exon	81545155	81545236	-
GWHAAZE00000006	exon	81544334	81544420	-
GWHAAZE00000006	exon	81543812	81543895	-
GWHAAZE00000006	exon	81543394	81543525	-
GWHAAZE00000006	exon	81543123	81543245	-
GWHAAZE00000006	exon	81542751	81543047	-
GWHAAZE00000006	CDS	81547833	81547939	-
GWHAAZE00000006	CDS	81547232	81547403	-
GWHAAZE00000006	CDS	81546390	81546573	-
GWHAAZE00000006	CDS	81545703	81545812	-
GWHAAZE00000006	CDS	81545481	81545551	-
GWHAAZE00000006	CDS	81545155	81545236	-
GWHAAZE00000006	CDS	81544334	81544420	-
GWHAAZE00000006	CDS	81543812	81543895	-
GWHAAZE00000006	CDS	81543394	81543525	-
GWHAAZE00000006	CDS	81543123	81543245	-
GWHAAZE00000006	CDS	81542751	81543047	-

Transcript Sequence
>GWHTAAZE023010 ATGAATGAAAATGAGAAGTTCTCCTCTGCACTTGCTCGAGTTGAGAAATATAACGAAGCACGGCGGGATATGGATAGAAAACTTGATATGCAGTATCAGCGCAGAATTGCAGAGGCACTTGATAATCACTTGACTGCTGTCCAGAGGGACCATGAACACAAATCGCAAATAGAAGAACGGAGGATAAGAGATGATGCAGCTTATGAAGAGGCCCAAAGAAAGGAGAAGGCTCTTCGAGAAGAAAAAGTGCGGCAACAAAAACTTAAAGCAGAAATGGAGGCTAGACTTGAGGCTGAAAAGAAGAGAGCTGAAGAATTAAAAGCAGCAGCTTTGGATGCTGAAAGAAAAGCAGCAAAAGATGCTGCTGAAAAGGCTGCTGCTGCTGCATTGGTATCTTCAAAGGAAGTTACGGGGCAGCCTAAGGGATCTGGATCTGATCAACAGAAGAAAGTGCAGTCTACAGGAAATATTCTCAAGGGTGCAGAAAGTTCTCTAAAATTGGAGGAAAGGAGATTACAAATTTACAAGGAAGTAGTGGCAAAAAATGAGGCATTGGGACTGGGTTATACTAAGGAACATCGTAGTCATGCAATGCAAATAGCTAGGCGGATCAAAACAATAACTGGGACAAAGGAAAATGTTAGGGCAAAAGCGGATGAATTAATCAAGTTACTCAGTCATTCCCAGTATCCCCAATCCATCTGTATCGCAATGTTTGCTGAAAAGCTTATCTCTCAGTGCGTAAATCCTACAGGAAGTTTCAGCAATGCCGTTTATGCGTATGGGCATGTTATCGTTCTTGTTACATCACAGGTCCCGCCTGCCATGGAAATTTTTCTTGCGGAGTTAAATAAGGCTTGCATCTACACCGTTCCGAAGTATATAAGTTACTCTGAGTCGGCATTTGAAACAAAAGAAGCTTACTACAAAGCCATTGGTTACCAAGAAGAAGATGGAAAGATCGAAAGCACTGAAAGTTATGTAGCTCGGTTAAGTTCGTATATGAAACTATATGGGGCTTTAGTTCAGACCGAAGCAGAGGGTGTCCAAAATCTGCATGGGATTAGAGAAGGTTGGGCGTGGTTTGCAAGATTTTTGAACCATCTCCCAGCAAATCTGTACACTGCAGTTGCACTAGAGGCATTCCTTCAAATGGCAGGATTTGCACTATACAAAAGATACAGATCTCAGTTCAAGAAGATACTGAATATAATTTCAGGCAACTTCCTTAAAGCACTGAGGGAAAGGGGAGATGAGAGGGTCAACAAGGTGGTGATGAGGATCCAGAGTTATATAGACTCCAACGAGTTCCTCAGGGAACCAGAAGGATGGAGGCTGCAGGGTTCTTTACTATCACACCAATTTGTTCCTGAATCAGACCACCAAGAGCAGTATTATCATCATCCCCCTCCCTCCAATAGGTATTCCTACCAACGTTTTGGCAACTGA

Network for GWHGAAZE022980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0014

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07817.14	GLE1	173	405	3.80E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016973	biological_process	poly(A)+ mRNA export from nucleus
GO:0005643	cellular_component	nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.864
	SRR3591706	second leaf	12.056
	SRR3591707	mature leaf	11.897
	SRR3591708	Shoot apex	20.768
	SRR3591709	Stem	20.503
	SRR3591710	White floral bud	20.540
	SRR3591711	White flower	24.607
	SRR3591712	Green floral bud	20.093
	SRR3591713	Yellow flower	27.342
SRP173429	SRR8316895	Juvenile bud stage	15.335
	SRR8316896	Juvenile bud stage	21.790
	SRR8316897	Juvenile bud stage	9.731
	SRR8316894	Third green stage	8.011
	SRR8316900	Third green stage	19.309
	SRR8316901	Third green stage	20.508
	SRR8316898	Complete white stage	8.536
	SRR8316899	Complete white stage	24.329
	SRR8316903	Complete white stage	12.602
	SRR8316902	Silver flowering stage	8.085
	SRR8316904	Silver flowering stage	14.579
	SRR8316905	Silver flowering stage	7.064
	SRR8316906	Gold flowering stage	20.126
	SRR8316907	Gold flowering stage	20.769
	SRR8316908	Gold flowering stage	22.544
SRP132670	SRR6706286	Control	16.353
	SRR6706287	Light intensity 50%	17.149
	SRR6706288	Light intensity 20%	16.657
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.736
	CNS0095593	Slightly white alabastrum(diploid) 2	11.597
	CNS0095594	Slightly white alabastrum(diploid) 3	10.637
	CNS0095595	Whole white alabastrum(diploid) 2	9.712
	CNS0095596	Whole white alabastrum(diploid) 3	10.222
	CNS0095597	Whole white alabastrum(diploid) 4	7.788
	CNS0095598	Silvery flower (diploied) 1	10.379
	CNS0095599	Silvery flower (diploied) 2	12.487
	CNS0095600	Silvery flower (diploied) 3	15.573
	CNS0095601	Golden flower (diploid) 1	8.825
	CNS0095602	Golden flower (diploid) 2	10.790
	CNS0095603	Golden flower (diploid) 3	10.681
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.613
	CNS0095610	Silvery flower (tetraploid) 1	9.653
	CNS0095611	Silvery flower (tetraploid) 2	7.552
	CNS0095612	Silvery flower (tetraploid) 3	9.392
	CNS0095613	Golden flower (tetraploid) 1	6.092
	CNS0095614	Golden flower (tetraploid) 2	8.462
	CNS0095615	Golden flower (tetraploid) 3	10.576
CRA001975	CRR073297	Stem 1	18.223
	CRR073298	Stem 2	15.540
	CRR073299	Stem 3	9.590
	CRR073300	Leaf 1	15.512
	CRR073301	Leaf 2	12.983
	CRR073302	Leaf 3	10.237
	CRR073303	Juvenile bud 1	10.671
	CRR073304	Juvenile bud 2	8.233
	CRR073305	Juvenile bud 3	10.711
	CRR073306	Third green 1	3.726
	CRR073307	Third green 2	3.188
	CRR073308	Third green 3	4.008
	CRR073309	Second white 1	3.598
	CRR073310	Second white 2	4.059
	CRR073311	Second white 3	5.638
	CRR073312	Silver flowering 1	3.904
	CRR073313	Silver flowering 2	3.963
	CRR073314	Silver flowering 3	4.625
	CRR073315	Gold flowering 1	3.501
	CRR073316	Gold flowering 2	11.091
	CRR073317	Gold flowering 3	3.386
	CRR073318	Tawny withering 1	8.759
	CRR073319	Tawny withering 2	7.546
	CRR073320	Tawny withering 3	9.714