Detail information of GWHGAAZE022994


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011086701.10PREDICTED: probable pectate lyase 5 [Sesamum indicum]
COGYP_001628843.12E-22hypothetical protein Bpet0241
Swissprottr|Q9FXD8|PLY5_ARATH0Probable pectate lyase 5 (Precursor)
trEMBLtr|D7SMF7|D7SMF7_VITVI0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G63180.17E-177Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8174432581746083-
GWHAAZE00000006mRNA8174432581746083-
GWHAAZE00000006exon8174432581744546-
GWHAAZE00000006exon8174483681744974-
GWHAAZE00000006exon8174508181745821-
GWHAAZE00000006exon8174592981746083-
GWHAAZE00000006CDS8174592981746083-
GWHAAZE00000006CDS8174508181745821-
GWHAAZE00000006CDS8174483681744974-
GWHAAZE00000006CDS8174432581744546-
Transcript Sequence

Network for GWHGAAZE022994

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41493349.20E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf88.791
SRR3591706second leaf329.561
SRR3591707mature leaf82.574
SRR3591708Shoot apex60.490
SRR3591709Stem14.344
SRR3591710White floral bud7.581
SRR3591711White flower3.652
SRR3591712Green floral bud47.902
SRR3591713Yellow flower0.009
SRP173429 SRR8316895Juvenile bud stage 5.417
SRR8316896Juvenile bud stage 9.107
SRR8316897Juvenile bud stage 2.272
SRR8316894Third green stage 14.862
SRR8316900Third green stage 91.291
SRR8316901Third green stage 70.627
SRR8316898Complete white stage 21.749
SRR8316899Complete white stage 152.681
SRR8316903Complete white stage 28.133
SRR8316902Silver flowering stage1.405
SRR8316904Silver flowering stage3.440
SRR8316905Silver flowering stage0.695
SRR8316906Gold flowering stage 0.460
SRR8316907Gold flowering stage 0.428
SRR8316908Gold flowering stage 0.129
SRP132670SRR6706286Control126.923
SRR6706287Light intensity 50%138.786
SRR6706288Light intensity 20%137.689
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.182
CNS0095593Slightly white alabastrum(diploid) 229.807
CNS0095594Slightly white alabastrum(diploid) 315.542
CNS0095595Whole white alabastrum(diploid) 220.058
CNS0095596Whole white alabastrum(diploid) 326.287
CNS0095597Whole white alabastrum(diploid) 427.765
CNS0095598Silvery flower (diploied) 10.459
CNS0095599Silvery flower (diploied) 20.597
CNS0095600Silvery flower (diploied) 30.620
CNS0095601Golden flower (diploid) 10.762
CNS0095602Golden flower (diploid) 20.265
CNS0095603Golden flower (diploid) 30.109
CNS0095604Slightly white alabastrum(tetraploid) 121.743
CNS0095605Slightly white alabastrum(tetraploid) 212.644
CNS0095606Slightly white alabastrum(tetraploid) 342.448
CNS0095607Whole white alabastrum(tetraploid) 110.986
CNS0095608Whole white alabastrum(tetraploid) 212.916
CNS0095609Whole white alabastrum(tetraploid) 334.905
CNS0095610Silvery flower (tetraploid) 10.397
CNS0095611Silvery flower (tetraploid) 21.085
CNS0095612Silvery flower (tetraploid) 30.643
CNS0095613Golden flower (tetraploid) 10.010
CNS0095614Golden flower (tetraploid) 20.011
CNS0095615Golden flower (tetraploid) 30.202
CRA001975CRR073297Stem 148.323
CRR073298Stem 258.014
CRR073299Stem 332.509
CRR073300Leaf 1122.862
CRR073301Leaf 2106.360
CRR073302Leaf 389.871
CRR073303Juvenile bud 1103.619
CRR073304Juvenile bud 235.290
CRR073305Juvenile bud 3104.516
CRR073306Third green 116.591
CRR073307Third green 28.650
CRR073308Third green 313.905
CRR073309Second white 10.693
CRR073310Second white 20.390
CRR073311Second white 30.197
CRR073312Silver flowering 10.019
CRR073313Silver flowering 20.003
CRR073314Silver flowering 30.000
CRR073315Gold flowering 115.504
CRR073316Gold flowering 213.325
CRR073317Gold flowering 328.557
CRR073318Tawny withering 12.463
CRR073319Tawny withering 20.305
CRR073320Tawny withering 33.855