Detail information of GWHGAAZE023001


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13279.17.8761E-146unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UYH2|A0A068UYH2_COFCA3E-146Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313|EMBL:CDP13279.1}
TAIR10AT1G24440.13E-88RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8188006781882172-
GWHAAZE00000006mRNA8188006781882172-
GWHAAZE00000006exon8188208481882172-
GWHAAZE00000006exon8188132981881491-
GWHAAZE00000006exon8188116081881226-
GWHAAZE00000006exon8188081581881052-
GWHAAZE00000006exon8188006781880277-
GWHAAZE00000006CDS8188208481882172-
GWHAAZE00000006CDS8188132981881491-
GWHAAZE00000006CDS8188116081881226-
GWHAAZE00000006CDS8188081581881052-
GWHAAZE00000006CDS8188006781880277-
Transcript Sequence

Network for GWHGAAZE023001

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21571974.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.573
SRR3591706second leaf3.279
SRR3591707mature leaf6.561
SRR3591708Shoot apex8.002
SRR3591709Stem13.980
SRR3591710White floral bud10.358
SRR3591711White flower17.511
SRR3591712Green floral bud6.446
SRR3591713Yellow flower16.389
SRP173429 SRR8316895Juvenile bud stage 2.886
SRR8316896Juvenile bud stage 5.310
SRR8316897Juvenile bud stage 4.431
SRR8316894Third green stage 2.041
SRR8316900Third green stage 7.943
SRR8316901Third green stage 5.080
SRR8316898Complete white stage 8.655
SRR8316899Complete white stage 10.901
SRR8316903Complete white stage 12.127
SRR8316902Silver flowering stage10.072
SRR8316904Silver flowering stage12.667
SRR8316905Silver flowering stage6.514
SRR8316906Gold flowering stage 25.997
SRR8316907Gold flowering stage 19.665
SRR8316908Gold flowering stage 20.771
SRP132670SRR6706286Control6.516
SRR6706287Light intensity 50%6.770
SRR6706288Light intensity 20%7.103
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.949
CNS0095593Slightly white alabastrum(diploid) 25.277
CNS0095594Slightly white alabastrum(diploid) 36.644
CNS0095595Whole white alabastrum(diploid) 26.470
CNS0095596Whole white alabastrum(diploid) 36.300
CNS0095597Whole white alabastrum(diploid) 43.112
CNS0095598Silvery flower (diploied) 111.067
CNS0095599Silvery flower (diploied) 212.538
CNS0095600Silvery flower (diploied) 319.505
CNS0095601Golden flower (diploid) 118.189
CNS0095602Golden flower (diploid) 216.714
CNS0095603Golden flower (diploid) 319.073
CNS0095604Slightly white alabastrum(tetraploid) 15.308
CNS0095605Slightly white alabastrum(tetraploid) 23.629
CNS0095606Slightly white alabastrum(tetraploid) 310.193
CNS0095607Whole white alabastrum(tetraploid) 13.309
CNS0095608Whole white alabastrum(tetraploid) 24.294
CNS0095609Whole white alabastrum(tetraploid) 35.622
CNS0095610Silvery flower (tetraploid) 137.394
CNS0095611Silvery flower (tetraploid) 230.901
CNS0095612Silvery flower (tetraploid) 314.986
CNS0095613Golden flower (tetraploid) 116.277
CNS0095614Golden flower (tetraploid) 230.685
CNS0095615Golden flower (tetraploid) 319.602
CRA001975CRR073297Stem 19.786
CRR073298Stem 29.018
CRR073299Stem 313.692
CRR073300Leaf 18.075
CRR073301Leaf 27.950
CRR073302Leaf 310.588
CRR073303Juvenile bud 110.893
CRR073304Juvenile bud 215.326
CRR073305Juvenile bud 312.463
CRR073306Third green 124.555
CRR073307Third green 215.373
CRR073308Third green 317.280
CRR073309Second white 130.570
CRR073310Second white 223.320
CRR073311Second white 316.001
CRR073312Silver flowering 111.867
CRR073313Silver flowering 28.446
CRR073314Silver flowering 313.542
CRR073315Gold flowering 16.616
CRR073316Gold flowering 26.684
CRR073317Gold flowering 33.158
CRR073318Tawny withering 16.705
CRR073319Tawny withering 25.080
CRR073320Tawny withering 34.933