Gene detail

Detail information of GWHGAAZE023005

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267616.1	0	PREDICTED: two-component response regulator ARR11 [Vitis vinifera]
COG	YP_462742.1	4E-17	sigma-54-dependent transcriptional regulator
Swissprot	tr\|Q9FXD6\|ARR11_ARATH	2E-131	Two-component response regulator ARR11
trEMBL	tr\|D7TAK2\|D7TAK2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27525.3}
TAIR10	AT1G67710.1	5E-111	response regulator 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81929350	81932659	-
GWHAAZE00000006	mRNA	81929350	81932659	-
GWHAAZE00000006	exon	81929350	81930342	-
GWHAAZE00000006	exon	81930572	81930648	-
GWHAAZE00000006	exon	81930842	81931228	-
GWHAAZE00000006	exon	81931326	81931478	-
GWHAAZE00000006	exon	81932524	81932659	-
GWHAAZE00000006	CDS	81932524	81932659	-
GWHAAZE00000006	CDS	81931326	81931478	-
GWHAAZE00000006	CDS	81930842	81931228	-
GWHAAZE00000006	CDS	81930572	81930648	-
GWHAAZE00000006	CDS	81929350	81930342	-

Transcript Sequence
>GWHTAAZE023035 ATGGATAGTAGTTGTAATGGATTTTCCTCTCCCAGAACCGACGCATTTCCCGCCGGTCTCCGAGTTCTCGTTGTCGATGATGATCCCACGTGGTTGAAAATACTTGAAAAGATGCTCAAGAAGTGTTCTTATGAAGTGACTACATGTGGTCTAGCAACAGAGGCTCTGGATCTGCTTCGTGAGAGAAAAGACGGTTTTGACATAGTAATCAGTGACGTCAACATGCCCGACATGGATGGTTTTAAGCTTTTGGAGCATGTAGGACTTGAGATGGACCTTCCAGTAATAATGATGTCTGTTGATGGAGAAACCAGCAGGGTTATGAAAGGTGTTCAACATGGAGCCTGTGATTATCTTCTTAAGCCGATAAGAATGAAAGAGCTTAGGAATATTTGGCAACATGTTTTTCGAAAGAAGATACACGAGGTGAGAGATATTGAAAGTCATGAAGGAATTGAAGAGTTTGAGATGATGAGAAATGGATCTGATCAATCTGATGATGGCTACTTTCTTTGTGGAGGTGACCTGACTCTAGGAAAGAAGAGAAAAGAAGCCGAAAACAAGCAGGACGAAAAAGACTACGGCGATCCTTCTTCTCTGAAGAAAGCTAGAGTAGTTTGGACTGTAGATCTCCATCAGAAATTTGTCAAAGCTGTAAACCAAATTGGATTTGATAAAGTTGGTCCTAAGAAAATACTTGACTTGATGAACGTGCCTTGGTTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTACCGCCTCTACTTGAGTAGATTACAGAAGGAAAACGATCTAAAAGCTTCTTTTGGTGGGATAAAGCATTCAGATCTCCTTTTAAAGGACCCTGCTGGATGCAGCCTTCAGCATTCAATCAATATGCCAAGAATCGATAGCAACTACCTAATTCCAACCAATATTCTTGTCCAAAATGCCAATCCCAAAGCCCATGAATGCGATCTGACAAATAATGTTTCATTGCCAATAAATGGTGATAATCCTGAACCTCAAAAGACCACCAGTTCAAGAATGGGTTTCAATCACTCTTTTGGGTCCCTTGATTCAAACATGAGGTTTTCAACATTTGATTCTACCATCCCAACACAGTACTCTTGGAGCGGAGAAGTGAAGGAGATTCAATTCAAACAAGAACATAAGCCACACCAATTAGAGAATAGCCTCAACCATCTAGCTTTATCTAGTCTCCAACATCACATCCAAGTTAATAATATTGAATCGCCTCCTTCCTCTTTGAGTCCTAAACCTTTCAACAAAGAAAGTGATAATAAACTGACACACACTGAAAATAAGCTTCCCTATGCCACCAAATACAAAAATCAAACGAGTCAAGGGGGAAACACAACTAACTTGTTTTCCATGCAATCTGAGAGCCATACCACAAATTTTCACCCTTTCGAGCCAATTACCAGTACTACATGGAACATGAAGAATCAGCATTTAGACCATGTTTCTGTAAACGAACTGGAATCTCCCGAGGGAAACCTAATTTTGGGAAAGGGGTCGGCCTTTTCATCCTTGGATGAAGACCTGCATGCTTTTTTGCTTAGAGGGCATTTGTCCTCCTCAAATCTTGGTCTCCAAAACAAAGAAGTTTTCGAGTGCAACAATCCAGAACTCATTGCTGAAGTTCCTCCCTACCTGTATGATGCGCTGAGGTTTGATTATGAACATCCTTGTGACTCAATTGAATATCCTGTTATAGACGAAGGTCTATTCATCGCTTGA

Network for GWHGAAZE023005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	22	131	1.70E-24
PF00249.32	Myb_DNA-binding	204	254	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.662
	SRR3591706	second leaf	7.644
	SRR3591707	mature leaf	7.832
	SRR3591708	Shoot apex	6.223
	SRR3591709	Stem	12.031
	SRR3591710	White floral bud	4.935
	SRR3591711	White flower	4.646
	SRR3591712	Green floral bud	8.153
	SRR3591713	Yellow flower	1.705
SRP173429	SRR8316895	Juvenile bud stage	2.578
	SRR8316896	Juvenile bud stage	3.279
	SRR8316897	Juvenile bud stage	0.757
	SRR8316894	Third green stage	1.942
	SRR8316900	Third green stage	5.301
	SRR8316901	Third green stage	3.471
	SRR8316898	Complete white stage	0.946
	SRR8316899	Complete white stage	8.411
	SRR8316903	Complete white stage	1.556
	SRR8316902	Silver flowering stage	1.323
	SRR8316904	Silver flowering stage	1.813
	SRR8316905	Silver flowering stage	0.690
	SRR8316906	Gold flowering stage	0.680
	SRR8316907	Gold flowering stage	1.236
	SRR8316908	Gold flowering stage	1.888
SRP132670	SRR6706286	Control	1.157
	SRR6706287	Light intensity 50%	0.940
	SRR6706288	Light intensity 20%	1.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.300
	CNS0095593	Slightly white alabastrum(diploid) 2	4.215
	CNS0095594	Slightly white alabastrum(diploid) 3	1.968
	CNS0095595	Whole white alabastrum(diploid) 2	4.132
	CNS0095596	Whole white alabastrum(diploid) 3	2.153
	CNS0095597	Whole white alabastrum(diploid) 4	2.390
	CNS0095598	Silvery flower (diploied) 1	0.626
	CNS0095599	Silvery flower (diploied) 2	1.172
	CNS0095600	Silvery flower (diploied) 3	1.160
	CNS0095601	Golden flower (diploid) 1	1.667
	CNS0095602	Golden flower (diploid) 2	1.325
	CNS0095603	Golden flower (diploid) 3	1.712
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.919
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.189
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.444
	CNS0095610	Silvery flower (tetraploid) 1	2.195
	CNS0095611	Silvery flower (tetraploid) 2	1.504
	CNS0095612	Silvery flower (tetraploid) 3	2.280
	CNS0095613	Golden flower (tetraploid) 1	0.530
	CNS0095614	Golden flower (tetraploid) 2	1.912
	CNS0095615	Golden flower (tetraploid) 3	0.852
CRA001975	CRR073297	Stem 1	3.013
	CRR073298	Stem 2	2.623
	CRR073299	Stem 3	1.881
	CRR073300	Leaf 1	4.773
	CRR073301	Leaf 2	2.889
	CRR073302	Leaf 3	2.882
	CRR073303	Juvenile bud 1	3.429
	CRR073304	Juvenile bud 2	0.889
	CRR073305	Juvenile bud 3	4.652
	CRR073306	Third green 1	0.501
	CRR073307	Third green 2	0.253
	CRR073308	Third green 3	0.878
	CRR073309	Second white 1	0.095
	CRR073310	Second white 2	0.759
	CRR073311	Second white 3	0.481
	CRR073312	Silver flowering 1	0.045
	CRR073313	Silver flowering 2	0.643
	CRR073314	Silver flowering 3	0.209
	CRR073315	Gold flowering 1	2.242
	CRR073316	Gold flowering 2	2.186
	CRR073317	Gold flowering 3	2.023
	CRR073318	Tawny withering 1	5.284
	CRR073319	Tawny withering 2	7.696
	CRR073320	Tawny withering 3	5.260