Gene detail

Detail information of GWHGAAZE023017

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGK63074.1	0	glyceraldehyde-3-phosphate dehydrogenase [Eleutherococcus senticosus]
COG	YP_004042509.1	1E-163	glyceraldehyde-3-phosphate dehydrogenase
Swissprot	tr\|P34783\|G3P_ATRNU	0	Glyceraldehyde-3-phosphate dehydrogenase
trEMBL	tr\|N0BKE3\|N0BKE3_9APIA	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}
TAIR10	AT1G13440.1	8E-167	glyceraldehyde-3-phosphate dehydrogenase C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82108312	82110926	+
GWHAAZE00000006	mRNA	82108312	82110926	+
GWHAAZE00000006	exon	82108312	82108315	+
GWHAAZE00000006	exon	82108405	82108428	+
GWHAAZE00000006	exon	82108534	82108634	+
GWHAAZE00000006	exon	82109001	82109116	+
GWHAAZE00000006	exon	82109197	82109296	+
GWHAAZE00000006	exon	82109533	82109679	+
GWHAAZE00000006	exon	82109773	82109833	+
GWHAAZE00000006	exon	82109960	82110057	+
GWHAAZE00000006	exon	82110371	82110513	+
GWHAAZE00000006	exon	82110640	82110723	+
GWHAAZE00000006	exon	82110833	82110926	+
GWHAAZE00000006	CDS	82108312	82108315	+
GWHAAZE00000006	CDS	82108405	82108428	+
GWHAAZE00000006	CDS	82108534	82108634	+
GWHAAZE00000006	CDS	82109001	82109116	+
GWHAAZE00000006	CDS	82109197	82109296	+
GWHAAZE00000006	CDS	82109533	82109679	+
GWHAAZE00000006	CDS	82109773	82109833	+
GWHAAZE00000006	CDS	82109960	82110057	+
GWHAAZE00000006	CDS	82110371	82110513	+
GWHAAZE00000006	CDS	82110640	82110723	+
GWHAAZE00000006	CDS	82110833	82110926	+

Transcript Sequence
>GWHTAAZE023047 ATGGGCAAGATTAAGATCGGAATCAACGGTTTCGGTAGGATCGGACGTTTGGTCGCGAGAGTTGCTCTACAAAGAGACGATGTTGAACTTGTTGCTGTTAATGATCCTTTCATCACCACTGACTACATGACATATATGTTCAAGTATGACAGTGTTCATGGCCAGTGGAAGCATCATGAGCTTAAGGTCAAGGACGAAAAGACCCTTCTTTTTGGTGAGAAACCAGTCACCGTTTTTGGCATCAGGAACCCTGAGGAGATCCCATGGGGCCAAGCCGGAGCCGATTTTGTGATTGAATCTACCGGAGTATTCACAGACAAGGACAAGGCTGCTGCCCACTTGAAGGGTGGTGCGAAGAAGGTTGTCATCTCCGCTCCTAGTAAAGATGCTCCCATGTTTGTTGTGGGTGTTAATGAGAAGGAATACAAGCCTGAACTTACCATTGTCTCCAATGCTAGCTGTACTACCAACTGTCTTGCTCCCCTGGCTAAGGTCATCAATGATAGGTTTGGCATTGTTGAGGGTCTTATGACCACTGTCCACTCTATTACTGCCACTCAGAAAACTGTGGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCTTTCAACATCATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTTGGTAAAGTGCTGCCAGCGCTGAATGGTAAGCTGACTGGAATGGCCTTCCGAGTTCCAACTGTGGATGTTTCAGTTGTGGACCTCACTGTAAGGCTTGAGAAGAAGGCAACCTATGAGCAGATCAAAGCTGCTATCAAAGAGGAGTCAGAGGGCAAACTCAAAGGTATCTTGGGGTACACTGAAGACGATGTGGTATCCACAGATTTCATTGGTGATAGCAGGTCAAGCATCTTTGATGCCAAGGCTGGGATTGCTTTGAATGATAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAATGGGGATACAGGTAA

Network for GWHGAAZE023017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00044.25	Gp_dh_N	4	107	4.10E-34
PF02800.21	Gp_dh_C	159	316	5.50E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00134	GAPDH, gapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Carbon fixation in photosynthetic organisms	map00710
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006006	biological_process	glucose metabolic process
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	206.565
	SRR3591706	second leaf	85.392
	SRR3591707	mature leaf	104.333
	SRR3591708	Shoot apex	147.413
	SRR3591709	Stem	147.353
	SRR3591710	White floral bud	184.960
	SRR3591711	White flower	256.501
	SRR3591712	Green floral bud	270.672
	SRR3591713	Yellow flower	206.225
SRP173429	SRR8316895	Juvenile bud stage	151.686
	SRR8316896	Juvenile bud stage	185.936
	SRR8316897	Juvenile bud stage	104.398
	SRR8316894	Third green stage	93.737
	SRR8316900	Third green stage	288.816
	SRR8316901	Third green stage	275.678
	SRR8316898	Complete white stage	103.381
	SRR8316899	Complete white stage	326.275
	SRR8316903	Complete white stage	124.474
	SRR8316902	Silver flowering stage	113.410
	SRR8316904	Silver flowering stage	125.847
	SRR8316905	Silver flowering stage	68.830
	SRR8316906	Gold flowering stage	213.194
	SRR8316907	Gold flowering stage	206.940
	SRR8316908	Gold flowering stage	225.512
SRP132670	SRR6706286	Control	336.578
	SRR6706287	Light intensity 50%	326.836
	SRR6706288	Light intensity 20%	363.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	186.839
	CNS0095593	Slightly white alabastrum(diploid) 2	171.018
	CNS0095594	Slightly white alabastrum(diploid) 3	140.162
	CNS0095595	Whole white alabastrum(diploid) 2	161.174
	CNS0095596	Whole white alabastrum(diploid) 3	174.257
	CNS0095597	Whole white alabastrum(diploid) 4	137.409
	CNS0095598	Silvery flower (diploied) 1	203.585
	CNS0095599	Silvery flower (diploied) 2	171.862
	CNS0095600	Silvery flower (diploied) 3	236.602
	CNS0095601	Golden flower (diploid) 1	164.516
	CNS0095602	Golden flower (diploid) 2	218.692
	CNS0095603	Golden flower (diploid) 3	209.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	202.915
	CNS0095605	Slightly white alabastrum(tetraploid) 2	186.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	326.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	129.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	125.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	298.290
	CNS0095610	Silvery flower (tetraploid) 1	235.746
	CNS0095611	Silvery flower (tetraploid) 2	242.596
	CNS0095612	Silvery flower (tetraploid) 3	207.001
	CNS0095613	Golden flower (tetraploid) 1	134.943
	CNS0095614	Golden flower (tetraploid) 2	220.691
	CNS0095615	Golden flower (tetraploid) 3	151.602
CRA001975	CRR073297	Stem 1	346.829
	CRR073298	Stem 2	326.425
	CRR073299	Stem 3	407.285
	CRR073300	Leaf 1	376.402
	CRR073301	Leaf 2	420.989
	CRR073302	Leaf 3	603.194
	CRR073303	Juvenile bud 1	556.391
	CRR073304	Juvenile bud 2	457.267
	CRR073305	Juvenile bud 3	457.407
	CRR073306	Third green 1	237.271
	CRR073307	Third green 2	186.216
	CRR073308	Third green 3	190.143
	CRR073309	Second white 1	304.209
	CRR073310	Second white 2	173.483
	CRR073311	Second white 3	118.584
	CRR073312	Silver flowering 1	178.773
	CRR073313	Silver flowering 2	252.089
	CRR073314	Silver flowering 3	165.791
	CRR073315	Gold flowering 1	181.137
	CRR073316	Gold flowering 2	213.065
	CRR073317	Gold flowering 3	243.904
	CRR073318	Tawny withering 1	424.279
	CRR073319	Tawny withering 2	358.783
	CRR073320	Tawny withering 3	352.849