Gene detail

Detail information of GWHGAAZE023021

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009610299.1	PREDICTED: DNA polymerase alpha subunit B [Nicotiana tomentosiformis]
trEMBL	tr\|M1BGW6\|M1BGW6_SOLTU	DNA polymerase alpha subunit B {ECO:0000256\|PIRNR:PIRNR018300}
TAIR10	AT1G67630.1	DNA polymerase alpha 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82140114	82145283	+
GWHAAZE00000006	mRNA	82140114	82145283	+
GWHAAZE00000006	exon	82140114	82140189	+
GWHAAZE00000006	exon	82140272	82140347	+
GWHAAZE00000006	exon	82140850	82140975	+
GWHAAZE00000006	exon	82141610	82141970	+
GWHAAZE00000006	exon	82142051	82142146	+
GWHAAZE00000006	exon	82142485	82142564	+
GWHAAZE00000006	exon	82142917	82142992	+
GWHAAZE00000006	exon	82143089	82143265	+
GWHAAZE00000006	exon	82143451	82143555	+
GWHAAZE00000006	exon	82143655	82143750	+
GWHAAZE00000006	exon	82143843	82143935	+
GWHAAZE00000006	exon	82144064	82144102	+
GWHAAZE00000006	exon	82144218	82144259	+
GWHAAZE00000006	exon	82144624	82144717	+
GWHAAZE00000006	exon	82144865	82144968	+
GWHAAZE00000006	exon	82145125	82145283	+
GWHAAZE00000006	CDS	82140114	82140189	+
GWHAAZE00000006	CDS	82140272	82140347	+
GWHAAZE00000006	CDS	82140850	82140975	+
GWHAAZE00000006	CDS	82141610	82141970	+
GWHAAZE00000006	CDS	82142051	82142146	+
GWHAAZE00000006	CDS	82142485	82142564	+
GWHAAZE00000006	CDS	82142917	82142992	+
GWHAAZE00000006	CDS	82143089	82143265	+
GWHAAZE00000006	CDS	82143451	82143555	+
GWHAAZE00000006	CDS	82143655	82143750	+
GWHAAZE00000006	CDS	82143843	82143935	+
GWHAAZE00000006	CDS	82144064	82144102	+
GWHAAZE00000006	CDS	82144218	82144259	+
GWHAAZE00000006	CDS	82144624	82144717	+
GWHAAZE00000006	CDS	82144865	82144968	+
GWHAAZE00000006	CDS	82145125	82145283	+

Transcript Sequence
>GWHTAAZE023051 ATGGAAGAGGAAATCAAAGCAGAATTCAAGAAGAGCGGATTCACTGTCGACGAAGAAGAAGATATACTCAGCAGATGTCTTACGTTCTGTATAAACTACAAGCTGACTGCAACCGATCTCGTTTCCAGCTGGGATGCTTACTCTATCAACAGGCAGCTAGGACGAACAGTACAAAATGCTCACATGGATGCATTCTTGCAGCAGCTACAAAATGAACAGAAAGAATCAATCATCAAAAAAGAGCCCGGATTGCACTTATACTCTAACGATGTAGATATGATTTTGAATGAAGAATTTGAAAATTTGACCGAAGATCTACCAGGCACTCCCATAGACAGATCTGACACGGGTTATTCAGAGTCGTTTGATTTAGTGCAGAAAACAAACGGGAGCATTGTTCCCTCCAGGAAACCCTTAGAATTAATTACCCCCTTTGGACAACGAAAGAACAAGTTTGTGGTGCAGTCCACTCTGAATGATCTGCACAATACAGAAAATATCAAAAAAGAACAAAATCAGGAGATCTCTGATGATGATATCATAAAGAGGGTACAACCCAGCAAAAGGTGTTCCCTACAGATCCACAGTTCTCAGCCTGAAGTGGGTTGCAGGTTCATGCATGACAGAATTGAGGACAAGTTCAACTTTCTTGAAAATAGAATTATAAAACACGCAAGAGATCTCGTTGATTCTGGGCTCTACGAGGAACCTTTGGACCCTACAGTTGCTTCACAGAAAAGTGTATTTGCGGTTGGCATGATCTGTTGTGATGAAGAAGGCCGTCTGAAGGAGAAGCCTATCTTTCTGCAAAGCAGTGTAATGCATTCGGGAGGGCAACGTGTGCGCCTTGACATTCATAAGTTGAGCCAATTTTCCATTTTTCCTGGCCAGGTGGTTGGTGTTGAAGGGCACAATCCCAGTGGGCACTGTCTAATTGCATCAAAAATAATGGATTGTCTTCCACTACCAGTTTCTGCTGATGAGAATTCTAATGCTGCAAAGAAACAGGCTCTGGATCTCGAGTTTCAGCCAACTGATCCATCTAATAAATTGTCAGAACTATCACTGATAATTGCAGCAGGTCCTTTTACCACAACGGACAACTTATTGTTTGAGCCTCTAGCTGAGCTGCTAGCATATGCACGGAGAAAGCAGCCTCAGTTGCTTATACTGCTAGGGCCATTCATTGATACGGAACATCCAGAGATCAAGAAAGGAACTCTAAACAGAACTTTTGATGAAATATTTCATCTTGAAATTCTTAGAAAGCTTCAAGACTACGTGGAATATATGGGTTCGGCTGCACGCGTGATTCTTATGCCATCTGTACGGGATGCTAACCATGACTCCGTTTTTCCTCAGCCTGCATTTGATATCCACGCACCTGATCTTAAACACCAGATAAGCAGTCTCCCTAATCCAGGAAGTTTTTGTGCGAATGAGATCAAGGTAGGTTGCTGCACCTTGGATATACTGAAACAGCTCAGTGGAGAGGAGATCTCGAGAAACCCTCCAGGGGGATCAAAGCATCGTTTGACAGAAGACACACCTTTGGACTTTTCACTCGCTCCAGAAGCTCTTCAGATCTCTTCAATACCGGATATTCTCATCCTCCCTTCAGACTTGGCTCATTTTGTCAGGGTGTTGTCCGTGGGGGGAGTAAGTGAAGGAGAAGAACAAGTGAAGTGCCTTTGTGTGAATCCAGGGAGACTGGCGAGGGGAGAAGGAGGGGGTTTCTTTGCGGAGATTAACTACCGTGGAAGCCCTGATTCTGCAAGTGCTTTGATTATCCGCATATAG

Network for GWHGAAZE023021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08418.11	Pol_alpha_B_N	20	221	1.90E-05
PF04042.17	DNA_pol_E_B	357	545	3.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02321	POLA2	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.068
	SRR3591706	second leaf	2.360
	SRR3591707	mature leaf	2.292
	SRR3591708	Shoot apex	18.118
	SRR3591709	Stem	4.056
	SRR3591710	White floral bud	2.728
	SRR3591711	White flower	2.694
	SRR3591712	Green floral bud	2.675
	SRR3591713	Yellow flower	2.160
SRP173429	SRR8316895	Juvenile bud stage	4.207
	SRR8316896	Juvenile bud stage	3.674
	SRR8316897	Juvenile bud stage	3.163
	SRR8316894	Third green stage	1.308
	SRR8316900	Third green stage	2.680
	SRR8316901	Third green stage	2.656
	SRR8316898	Complete white stage	0.693
	SRR8316899	Complete white stage	3.319
	SRR8316903	Complete white stage	1.642
	SRR8316902	Silver flowering stage	0.381
	SRR8316904	Silver flowering stage	0.772
	SRR8316905	Silver flowering stage	0.436
	SRR8316906	Gold flowering stage	1.816
	SRR8316907	Gold flowering stage	1.713
	SRR8316908	Gold flowering stage	1.532
SRP132670	SRR6706286	Control	3.438
	SRR6706287	Light intensity 50%	3.965
	SRR6706288	Light intensity 20%	5.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.514
	CNS0095593	Slightly white alabastrum(diploid) 2	3.961
	CNS0095594	Slightly white alabastrum(diploid) 3	2.806
	CNS0095595	Whole white alabastrum(diploid) 2	3.168
	CNS0095596	Whole white alabastrum(diploid) 3	1.882
	CNS0095597	Whole white alabastrum(diploid) 4	2.311
	CNS0095598	Silvery flower (diploied) 1	3.834
	CNS0095599	Silvery flower (diploied) 2	4.509
	CNS0095600	Silvery flower (diploied) 3	3.111
	CNS0095601	Golden flower (diploid) 1	2.391
	CNS0095602	Golden flower (diploid) 2	2.131
	CNS0095603	Golden flower (diploid) 3	2.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.269
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.588
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.584
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.266
	CNS0095610	Silvery flower (tetraploid) 1	1.015
	CNS0095611	Silvery flower (tetraploid) 2	1.044
	CNS0095612	Silvery flower (tetraploid) 3	0.784
	CNS0095613	Golden flower (tetraploid) 1	0.326
	CNS0095614	Golden flower (tetraploid) 2	0.695
	CNS0095615	Golden flower (tetraploid) 3	0.372
CRA001975	CRR073297	Stem 1	6.682
	CRR073298	Stem 2	6.021
	CRR073299	Stem 3	8.147
	CRR073300	Leaf 1	3.764
	CRR073301	Leaf 2	3.133
	CRR073302	Leaf 3	2.228
	CRR073303	Juvenile bud 1	2.409
	CRR073304	Juvenile bud 2	1.383
	CRR073305	Juvenile bud 3	4.388
	CRR073306	Third green 1	0.158
	CRR073307	Third green 2	0.404
	CRR073308	Third green 3	0.516
	CRR073309	Second white 1	0.318
	CRR073310	Second white 2	0.230
	CRR073311	Second white 3	0.140
	CRR073312	Silver flowering 1	0.195
	CRR073313	Silver flowering 2	0.269
	CRR073314	Silver flowering 3	0.124
	CRR073315	Gold flowering 1	1.089
	CRR073316	Gold flowering 2	1.025
	CRR073317	Gold flowering 3	1.204
	CRR073318	Tawny withering 1	7.269
	CRR073319	Tawny withering 2	5.153
	CRR073320	Tawny withering 3	9.130