Detail information of GWHGAAZE023055


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009796451.10PREDICTED: F-box protein At1g67340 [Nicotiana sylvestris]
Swissprottr|Q9FYF9|FB76_ARATH1E-171F-box protein At1g67340
trEMBLtr|K4BYQ8|K4BYQ8_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g015420.2.1}
TAIR10AT1G67340.13E-134HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8265790682659446-
GWHAAZE00000006mRNA8265790682659446-
GWHAAZE00000006exon8265790682658661-
GWHAAZE00000006exon8265880882658970-
GWHAAZE00000006exon8265922082659446-
GWHAAZE00000006CDS8265922082659446-
GWHAAZE00000006CDS8265880882658970-
GWHAAZE00000006CDS8265790682658661-
Transcript Sequence

Network for GWHGAAZE023055

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01753.19zf-MYND3083487.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.602
SRR3591706second leaf8.654
SRR3591707mature leaf12.031
SRR3591708Shoot apex12.561
SRR3591709Stem6.909
SRR3591710White floral bud4.862
SRR3591711White flower2.274
SRR3591712Green floral bud2.745
SRR3591713Yellow flower0.404
SRP173429 SRR8316895Juvenile bud stage 2.171
SRR8316896Juvenile bud stage 1.365
SRR8316897Juvenile bud stage 0.469
SRR8316894Third green stage 0.405
SRR8316900Third green stage 2.407
SRR8316901Third green stage 2.697
SRR8316898Complete white stage 3.483
SRR8316899Complete white stage 1.067
SRR8316903Complete white stage 7.556
SRR8316902Silver flowering stage1.771
SRR8316904Silver flowering stage2.005
SRR8316905Silver flowering stage0.415
SRR8316906Gold flowering stage 0.454
SRR8316907Gold flowering stage 1.235
SRR8316908Gold flowering stage 0.930
SRP132670SRR6706286Control1.375
SRR6706287Light intensity 50%1.410
SRR6706288Light intensity 20%1.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.486
CNS0095593Slightly white alabastrum(diploid) 22.248
CNS0095594Slightly white alabastrum(diploid) 31.788
CNS0095595Whole white alabastrum(diploid) 24.574
CNS0095596Whole white alabastrum(diploid) 34.298
CNS0095597Whole white alabastrum(diploid) 47.088
CNS0095598Silvery flower (diploied) 12.027
CNS0095599Silvery flower (diploied) 22.451
CNS0095600Silvery flower (diploied) 31.603
CNS0095601Golden flower (diploid) 12.040
CNS0095602Golden flower (diploid) 20.812
CNS0095603Golden flower (diploid) 31.225
CNS0095604Slightly white alabastrum(tetraploid) 14.107
CNS0095605Slightly white alabastrum(tetraploid) 22.890
CNS0095606Slightly white alabastrum(tetraploid) 33.209
CNS0095607Whole white alabastrum(tetraploid) 19.463
CNS0095608Whole white alabastrum(tetraploid) 28.482
CNS0095609Whole white alabastrum(tetraploid) 32.710
CNS0095610Silvery flower (tetraploid) 15.329
CNS0095611Silvery flower (tetraploid) 21.536
CNS0095612Silvery flower (tetraploid) 31.624
CNS0095613Golden flower (tetraploid) 11.076
CNS0095614Golden flower (tetraploid) 21.217
CNS0095615Golden flower (tetraploid) 30.422
CRA001975CRR073297Stem 13.758
CRR073298Stem 23.100
CRR073299Stem 33.678
CRR073300Leaf 12.882
CRR073301Leaf 21.828
CRR073302Leaf 31.653
CRR073303Juvenile bud 10.585
CRR073304Juvenile bud 23.039
CRR073305Juvenile bud 31.566
CRR073306Third green 12.348
CRR073307Third green 24.711
CRR073308Third green 35.769
CRR073309Second white 10.680
CRR073310Second white 20.257
CRR073311Second white 30.584
CRR073312Silver flowering 10.753
CRR073313Silver flowering 21.318
CRR073314Silver flowering 30.197
CRR073315Gold flowering 12.526
CRR073316Gold flowering 24.448
CRR073317Gold flowering 37.336
CRR073318Tawny withering 15.449
CRR073319Tawny withering 29.346
CRR073320Tawny withering 38.880