Gene detail

Detail information of GWHGAAZE023056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006352516.1	8.4294E-164	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like [Solanum tuberosum]
Swissprot	tr\|P10708\|CB12_SOLLC	4E-165	Chlorophyll a-b binding protein 7, chloroplastic (Precursor)
trEMBL	tr\|I1KHL4\|I1KHL4_SOYBN	4E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05320.1}
TAIR10	AT3G61470.1	3E-114	photosystem I light harvesting complex gene 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82684780	82687333	+
GWHAAZE00000006	mRNA	82684780	82687333	+
GWHAAZE00000006	exon	82684780	82684823	+
GWHAAZE00000006	exon	82685261	82685449	+
GWHAAZE00000006	exon	82685587	82685624	+
GWHAAZE00000006	exon	82685760	82686274	+
GWHAAZE00000006	exon	82687104	82687333	+
GWHAAZE00000006	CDS	82684780	82684823	+
GWHAAZE00000006	CDS	82685261	82685449	+
GWHAAZE00000006	CDS	82685587	82685624	+
GWHAAZE00000006	CDS	82685760	82686274	+
GWHAAZE00000006	CDS	82687104	82687121	+
GWHAAZE00000006	three_prime_UTR	82687122	82687333	+

Transcript Sequence
>GWHTAAZE023086 ATGGCAATACCATCAGCCAATCGCAATCCTATCCTTCAAGATAATACCCAGAAGAATGGATCTATTGTTGGTGCAACAAGGGCTTCTTTCCTTGGCGGCAAAAAGCTTAGAGTGGGAAAGTATGCAGCAATGCCGGTTAGAGCACAATCCATTGGTACTGTTTGTGCCTTGGCCGACCCCGAAAGGCCCCTCTGGTTCCCTGGTAGCACCCCTCCTCCATGGCTTGATGGCAGCCTACCTGGAGACTTCGGCTTTGATCCTCTTGGTCTAGGATCTGATCCTGAGACATTGAAATGGAACCAGCAAGCGGAGATTGTACACTGCAGATGGGCAATGTTAGGTGCTGCCGGTATTTTTATCCCCGAATTTCTAACAAAGATAGGAATTCTAAACACGCCTTCATGGTACACTGCCGGTGAACAAGATTATTTCACTGACAAAACAACGCTCTTCATAGTCGAGCTAGTTTTGATTGGTTGGGCTGAGGGAAGAAGATGGGCAGACATAATTAAACCAGGAAGTGTGAACACAGACCCCATCTTCCCCAACAACAAGCTCACAGGGACAGATGTGGGGTACCCTGGTGGCCTATGGTTTGACCCACTTGGCTGGGGAAGCGGTTCACCTGAGAAAATCAAGGAGTTGAGGACAAAGGAGATAAAAAATGGGAGACTGGCTATGTTAGCCGTTATGGGTGCCTGGTTCCAAGCTAACTACACAGGAACGGGGCCTATTGATAACCTATTTGCTCACCTTGCTGATCCTGGTCATGCCACCATATTTGCTGCTTTCAGCCCCAAGTGATAGAAGCCAACGGAGAATTCTAACTGCAATTGTTAAAGAAACTTTGCTAAACGTATTTCTGAGAGGAAGGATCTATTGTGTGTTTTTTCCAAGCGATGTTTGTATCAACTTGTATTCTCCTGTTTCTGTCTGCTGTAGAAAGTTCTAATGCAGTGTACAAATGCCTCTTTGAACTTAAAAGTCGTAAATACAAATTCAAGTCCTAATGAAAA

Network for GWHGAAZE023056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	71	237	6.20E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08908	LHCA2	Metabolic pathways	map01100
K08908	LHCA2	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	368.057
	SRR3591706	second leaf	2502.088
	SRR3591707	mature leaf	1075.043
	SRR3591708	Shoot apex	793.519
	SRR3591709	Stem	189.159
	SRR3591710	White floral bud	6.073
	SRR3591711	White flower	12.709
	SRR3591712	Green floral bud	7.362
	SRR3591713	Yellow flower	0.528
SRP173429	SRR8316895	Juvenile bud stage	49.465
	SRR8316896	Juvenile bud stage	25.552
	SRR8316897	Juvenile bud stage	18.220
	SRR8316894	Third green stage	9.122
	SRR8316900	Third green stage	5.381
	SRR8316901	Third green stage	7.516
	SRR8316898	Complete white stage	0.923
	SRR8316899	Complete white stage	6.356
	SRR8316903	Complete white stage	8.809
	SRR8316902	Silver flowering stage	0.363
	SRR8316904	Silver flowering stage	1.322
	SRR8316905	Silver flowering stage	0.187
	SRR8316906	Gold flowering stage	1.385
	SRR8316907	Gold flowering stage	0.780
	SRR8316908	Gold flowering stage	0.650
SRP132670	SRR6706286	Control	11.149
	SRR6706287	Light intensity 50%	6.586
	SRR6706288	Light intensity 20%	4.736
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.218
	CNS0095593	Slightly white alabastrum(diploid) 2	17.166
	CNS0095594	Slightly white alabastrum(diploid) 3	28.188
	CNS0095595	Whole white alabastrum(diploid) 2	6.879
	CNS0095596	Whole white alabastrum(diploid) 3	4.753
	CNS0095597	Whole white alabastrum(diploid) 4	5.820
	CNS0095598	Silvery flower (diploied) 1	112.882
	CNS0095599	Silvery flower (diploied) 2	91.793
	CNS0095600	Silvery flower (diploied) 3	15.455
	CNS0095601	Golden flower (diploid) 1	157.891
	CNS0095602	Golden flower (diploid) 2	72.830
	CNS0095603	Golden flower (diploid) 3	67.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.735
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.187
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.700
	CNS0095610	Silvery flower (tetraploid) 1	6.395
	CNS0095611	Silvery flower (tetraploid) 2	10.437
	CNS0095612	Silvery flower (tetraploid) 3	1.847
	CNS0095613	Golden flower (tetraploid) 1	0.690
	CNS0095614	Golden flower (tetraploid) 2	8.701
	CNS0095615	Golden flower (tetraploid) 3	4.133
CRA001975	CRR073297	Stem 1	53.758
	CRR073298	Stem 2	39.801
	CRR073299	Stem 3	60.116
	CRR073300	Leaf 1	3.161
	CRR073301	Leaf 2	2.729
	CRR073302	Leaf 3	1.819
	CRR073303	Juvenile bud 1	0.464
	CRR073304	Juvenile bud 2	0.885
	CRR073305	Juvenile bud 3	0.546
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.776
	CRR073309	Second white 1	0.119
	CRR073310	Second white 2	0.543
	CRR073311	Second white 3	1.378
	CRR073312	Silver flowering 1	1.580
	CRR073313	Silver flowering 2	0.105
	CRR073314	Silver flowering 3	0.274
	CRR073315	Gold flowering 1	228.562
	CRR073316	Gold flowering 2	210.758
	CRR073317	Gold flowering 3	245.838
	CRR073318	Tawny withering 1	43.826
	CRR073319	Tawny withering 2	43.785
	CRR073320	Tawny withering 3	35.673