Gene detail

Detail information of GWHGAAZE023063

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086813.1	1.5034E-106	PREDICTED: squamosa promoter-binding-like protein 12 [Sesamum indicum]
Swissprot	tr\|A2YGR5\|SPL12_ORYSI	3E-72	Squamosa promoter-binding-like protein 12
trEMBL	tr\|F6HGB1\|F6HGB1_VITVI	3E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51304.1}
TAIR10	AT5G43270.3	2E-49	squamosa promoter binding protein-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82768960	82770041	-
GWHAAZE00000006	mRNA	82768960	82770041	-
GWHAAZE00000006	exon	82768960	82769152	-
GWHAAZE00000006	exon	82769347	82770041	-
GWHAAZE00000006	CDS	82769347	82770041	-
GWHAAZE00000006	CDS	82768960	82769152	-

Transcript Sequence
>GWHTAAZE023093 ATGAATTCCTTCCGAACAATGGATTGGAATTCAAAGTGGGAGTGGGAAAACCTAGATATATTCAGTTCAAAAGCCAGTGAAAGTCCTAAGAAGATTCAAGCAACTGACTGGGGAGTTGTAGAGGGAGAAATTGATGCTGGGTCTTTCAATGTGTCTGGAGGAGGAGGTGGTGGTAGTGGTAGTGGTAGTGGTTCGGGTTCTGATTTGGGGCATGGTTCATCGGCAAAGAGCTCAATATCGGCTTCAACTGACTGTTCATCAAAGCAGGGGAAGTCAACATCCACTTTCACTTTTGAAGCTTTTGGAGATCTTCCTAAAGATTTTAGCAAGAAGAATGAATTGGTCAGAGCTCAGCTAAACAAAACTTCTCCTTCACTGGAGACTTCAGTTGGTTCCGGTGAACCGTTAATTGGCCTGAAACTTGGCAAGCGGACTTATTTTGAAAATAGTTGTACAGGAAGCGTCAGTAAAACCTCATCTTTTTCAACAACTCCAGCATCATCCACCTCTTCAAAGAAAATAAAGTTATCTTGTCAGGCTGCACATACTCCACGCTGTCAAGTTGAAGGGTGCAACCTTGATCTGTCATCGGCTAAAGAATATCATCGAAAGCATAGGGTCTGTGAAAGTCATTCCAAAAGCTCAAAGGTTGTTGTAGCAGGTCTAGAACGGAGGTTTTGCCAACAGTGTAGCAGGTTCCATAGTTTGTCAGAATTTGATGAAAAGAAGAGAAGTTGTCGGAGGCGACTTTCTGATCACAATGCACGGCGTCGCAAGCCGCAGCAGGAGCCTATTCAGTTCAATTCAACAAGGCTGTCTTCAGCATGTTATGGTAAATGTTTCTTGAACTCATCCTTTGTTTTTGAATTGAGCATCTTACATTTTTAA

Network for GWHGAAZE023063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	186	259	1.30E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.483
	SRR3591706	second leaf	19.212
	SRR3591707	mature leaf	14.384
	SRR3591708	Shoot apex	29.046
	SRR3591709	Stem	29.701
	SRR3591710	White floral bud	16.523
	SRR3591711	White flower	22.729
	SRR3591712	Green floral bud	18.355
	SRR3591713	Yellow flower	10.642
SRP173429	SRR8316895	Juvenile bud stage	24.269
	SRR8316896	Juvenile bud stage	15.673
	SRR8316897	Juvenile bud stage	13.052
	SRR8316894	Third green stage	10.653
	SRR8316900	Third green stage	17.088
	SRR8316901	Third green stage	15.336
	SRR8316898	Complete white stage	2.099
	SRR8316899	Complete white stage	27.158
	SRR8316903	Complete white stage	6.411
	SRR8316902	Silver flowering stage	2.604
	SRR8316904	Silver flowering stage	4.697
	SRR8316905	Silver flowering stage	1.369
	SRR8316906	Gold flowering stage	3.277
	SRR8316907	Gold flowering stage	3.314
	SRR8316908	Gold flowering stage	9.347
SRP132670	SRR6706286	Control	15.109
	SRR6706287	Light intensity 50%	16.009
	SRR6706288	Light intensity 20%	15.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.260
	CNS0095593	Slightly white alabastrum(diploid) 2	11.972
	CNS0095594	Slightly white alabastrum(diploid) 3	10.476
	CNS0095595	Whole white alabastrum(diploid) 2	13.323
	CNS0095596	Whole white alabastrum(diploid) 3	5.654
	CNS0095597	Whole white alabastrum(diploid) 4	7.242
	CNS0095598	Silvery flower (diploied) 1	20.608
	CNS0095599	Silvery flower (diploied) 2	16.089
	CNS0095600	Silvery flower (diploied) 3	7.833
	CNS0095601	Golden flower (diploid) 1	15.719
	CNS0095602	Golden flower (diploid) 2	17.151
	CNS0095603	Golden flower (diploid) 3	15.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.121
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.774
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.164
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.782
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.548
	CNS0095610	Silvery flower (tetraploid) 1	7.859
	CNS0095611	Silvery flower (tetraploid) 2	9.045
	CNS0095612	Silvery flower (tetraploid) 3	6.014
	CNS0095613	Golden flower (tetraploid) 1	3.199
	CNS0095614	Golden flower (tetraploid) 2	7.314
	CNS0095615	Golden flower (tetraploid) 3	3.914
CRA001975	CRR073297	Stem 1	39.297
	CRR073298	Stem 2	32.158
	CRR073299	Stem 3	31.805
	CRR073300	Leaf 1	18.299
	CRR073301	Leaf 2	16.848
	CRR073302	Leaf 3	20.607
	CRR073303	Juvenile bud 1	9.748
	CRR073304	Juvenile bud 2	6.075
	CRR073305	Juvenile bud 3	21.146
	CRR073306	Third green 1	2.199
	CRR073307	Third green 2	2.725
	CRR073308	Third green 3	5.013
	CRR073309	Second white 1	2.679
	CRR073310	Second white 2	4.058
	CRR073311	Second white 3	2.863
	CRR073312	Silver flowering 1	1.679
	CRR073313	Silver flowering 2	3.376
	CRR073314	Silver flowering 3	1.308
	CRR073315	Gold flowering 1	5.190
	CRR073316	Gold flowering 2	10.957
	CRR073317	Gold flowering 3	4.477
	CRR073318	Tawny withering 1	10.857
	CRR073319	Tawny withering 2	5.818
	CRR073320	Tawny withering 3	17.920