Detail information of GWHGAAZE023064


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043984.10AMP dependent CoA ligase, putative [Theobroma cacao]
COGYP_003407466.14E-115AMP-dependent synthetase and ligase
Swissprottr|Q9LQ12|4CLL1_ARATH04-coumarate--CoA ligase-like 1
trEMBLtr|A0A061E4C1|A0A061E4C1_THECC0AMP dependent CoA ligase, putative {ECO:0000313|EMBL:EOX99815.1}
TAIR10AT1G62940.10acyl-CoA synthetase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8277417282776776-
GWHAAZE00000006mRNA8277417282776776-
GWHAAZE00000006exon8277417282774600-
GWHAAZE00000006exon8277485082774995-
GWHAAZE00000006exon8277522182775419-
GWHAAZE00000006exon8277552682776107-
GWHAAZE00000006exon8277642082776776-
GWHAAZE00000006CDS8277642082776776-
GWHAAZE00000006CDS8277552682776107-
GWHAAZE00000006CDS8277522182775419-
GWHAAZE00000006CDS8277485082774995-
GWHAAZE00000006CDS8277417282774600-
Transcript Sequence

Network for GWHGAAZE023064

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding364241.80E-88
PF13193.7AMP-binding_C4865421.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.188
SRR3591706second leaf3.131
SRR3591707mature leaf0.967
SRR3591708Shoot apex2.073
SRR3591709Stem1.116
SRR3591710White floral bud1.079
SRR3591711White flower0.779
SRR3591712Green floral bud4.062
SRR3591713Yellow flower0.617
SRP173429 SRR8316895Juvenile bud stage 2.789
SRR8316896Juvenile bud stage 3.361
SRR8316897Juvenile bud stage 0.809
SRR8316894Third green stage 1.050
SRR8316900Third green stage 1.303
SRR8316901Third green stage 1.807
SRR8316898Complete white stage 0.015
SRR8316899Complete white stage 0.229
SRR8316903Complete white stage 0.163
SRR8316902Silver flowering stage0.069
SRR8316904Silver flowering stage0.225
SRR8316905Silver flowering stage0.035
SRR8316906Gold flowering stage 0.080
SRR8316907Gold flowering stage 0.142
SRR8316908Gold flowering stage 0.068
SRP132670SRR6706286Control2.794
SRR6706287Light intensity 50%2.214
SRR6706288Light intensity 20%1.410
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.558
CNS0095593Slightly white alabastrum(diploid) 21.303
CNS0095594Slightly white alabastrum(diploid) 32.944
CNS0095595Whole white alabastrum(diploid) 20.618
CNS0095596Whole white alabastrum(diploid) 30.547
CNS0095597Whole white alabastrum(diploid) 40.436
CNS0095598Silvery flower (diploied) 11.123
CNS0095599Silvery flower (diploied) 20.507
CNS0095600Silvery flower (diploied) 30.691
CNS0095601Golden flower (diploid) 12.559
CNS0095602Golden flower (diploid) 21.042
CNS0095603Golden flower (diploid) 30.942
CNS0095604Slightly white alabastrum(tetraploid) 11.475
CNS0095605Slightly white alabastrum(tetraploid) 22.637
CNS0095606Slightly white alabastrum(tetraploid) 33.358
CNS0095607Whole white alabastrum(tetraploid) 10.168
CNS0095608Whole white alabastrum(tetraploid) 20.164
CNS0095609Whole white alabastrum(tetraploid) 31.659
CNS0095610Silvery flower (tetraploid) 10.145
CNS0095611Silvery flower (tetraploid) 20.418
CNS0095612Silvery flower (tetraploid) 30.420
CNS0095613Golden flower (tetraploid) 10.110
CNS0095614Golden flower (tetraploid) 20.081
CNS0095615Golden flower (tetraploid) 30.056
CRA001975CRR073297Stem 13.221
CRR073298Stem 24.581
CRR073299Stem 37.725
CRR073300Leaf 10.915
CRR073301Leaf 21.132
CRR073302Leaf 31.213
CRR073303Juvenile bud 10.281
CRR073304Juvenile bud 20.082
CRR073305Juvenile bud 30.417
CRR073306Third green 10.029
CRR073307Third green 20.073
CRR073308Third green 30.136
CRR073309Second white 10.000
CRR073310Second white 20.026
CRR073311Second white 30.065
CRR073312Silver flowering 10.275
CRR073313Silver flowering 20.278
CRR073314Silver flowering 30.365
CRR073315Gold flowering 10.087
CRR073316Gold flowering 20.002
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.100
CRR073319Tawny withering 20.235
CRR073320Tawny withering 30.889