Gene detail

Detail information of GWHGAAZE023073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621034.1	1.34989E-94	PREDICTED: squamosa promoter-binding-like protein 16 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|P0DI11\|SP13B_ARATH	1E-51	Squamosa promoter-binding-like protein 13B
trEMBL	tr\|A0A068UYH8\|A0A068UYH8_COFCA	1E-94	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13362.1}
TAIR10	AT5G50570.2	2E-44	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82959288	82961206	-
GWHAAZE00000006	mRNA	82959288	82961206	-
GWHAAZE00000006	exon	82960992	82961206	-
GWHAAZE00000006	exon	82960302	82960438	-
GWHAAZE00000006	exon	82959447	82959904	-
GWHAAZE00000006	exon	82959288	82959362	-
GWHAAZE00000006	CDS	82960992	82961206	-
GWHAAZE00000006	CDS	82960302	82960438	-
GWHAAZE00000006	CDS	82959447	82959904	-
GWHAAZE00000006	CDS	82959288	82959362	-

Transcript Sequence
>GWHTAAZE023103 ATGGAGTTATCATCATCAACCGGATCATCGAAGAGGGCTAAAGCCCCTGGTAATGTTGGCCAAGTCTTAGTTTCTTGTTTAGTAGATGGATGTAATTCGGACCTCAGTCAATGCAGAGAGTACCACAGGCGCCATAAAGTATGCGAGGCTCACTCGAAGACTCCAAAGGTTACCATCGGGGGTCGAGAGCAACGGTTCTGCCAGCAGTGCAGCAGGTTCCATTCTCTGGAAGAATTTGACGAGGGAAAGCGAAGCTGTAGGAAACGCCTCGATGGCCATAACCGCCGCCGAAGAAAGCCTCAATCCGATTCTTTCCCCAGAAGTTCTGGAATTTTCTTTTCCGCTCCCCAAGGAACCAGACTCTTATCATTCGGTGGTCCACAAGTACTTGCAAATCCAGCAGTGAGCACAGCTTGGCCTGGTTCTATCAAAGCGGAGAATGAAAGTCTAATATTCACCAGCTCGCCCATGAACTACATTGAGAAACAAAACTCTTACCCAATAAATTCAGCTCCCAACACCTACAAAGAAATGAATCGGTTTCAATTCATTCAAGGCACTGATCACATTATCCCCGAGGTTTCTTCTTCGGTCAACAACAGAATGTTCTGTGATGGTGGGATAAATCGAGCGGGCAACTCCGATCGTGCTCTCTCTCTTCTGTCATCAGCGCCGACTAGTCAAACCCGAGACATGGGCTCAAGCCACATGGTGCACCACGAGCCAGTCCCACAGGCAGAGTCCTTTCATGAATTTGGGGGAGTGGGTCAGTTGTTCCCTTATTCTTCACAGGAAATGGAAAGCAAGGGAGGCATGTTTCATGATGGGGGGCCTGATGGGTCTTCAGCTGGTGGAGGTGGTTCTCACCAAACACTGTCGTTTGGC

Network for GWHGAAZE023073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	26	99	5.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.271
	SRR3591706	second leaf	52.236
	SRR3591707	mature leaf	62.187
	SRR3591708	Shoot apex	60.904
	SRR3591709	Stem	45.003
	SRR3591710	White floral bud	24.244
	SRR3591711	White flower	24.285
	SRR3591712	Green floral bud	18.461
	SRR3591713	Yellow flower	3.181
SRP173429	SRR8316895	Juvenile bud stage	51.570
	SRR8316896	Juvenile bud stage	37.565
	SRR8316897	Juvenile bud stage	19.171
	SRR8316894	Third green stage	15.067
	SRR8316900	Third green stage	17.660
	SRR8316901	Third green stage	28.690
	SRR8316898	Complete white stage	6.331
	SRR8316899	Complete white stage	84.405
	SRR8316903	Complete white stage	19.181
	SRR8316902	Silver flowering stage	5.589
	SRR8316904	Silver flowering stage	7.982
	SRR8316905	Silver flowering stage	4.221
	SRR8316906	Gold flowering stage	3.807
	SRR8316907	Gold flowering stage	6.534
	SRR8316908	Gold flowering stage	6.435
SRP132670	SRR6706286	Control	47.363
	SRR6706287	Light intensity 50%	39.886
	SRR6706288	Light intensity 20%	35.109
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.273
	CNS0095593	Slightly white alabastrum(diploid) 2	36.297
	CNS0095594	Slightly white alabastrum(diploid) 3	36.407
	CNS0095595	Whole white alabastrum(diploid) 2	26.103
	CNS0095596	Whole white alabastrum(diploid) 3	10.303
	CNS0095597	Whole white alabastrum(diploid) 4	20.650
	CNS0095598	Silvery flower (diploied) 1	33.834
	CNS0095599	Silvery flower (diploied) 2	31.936
	CNS0095600	Silvery flower (diploied) 3	15.120
	CNS0095601	Golden flower (diploid) 1	33.035
	CNS0095602	Golden flower (diploid) 2	25.637
	CNS0095603	Golden flower (diploid) 3	26.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.995
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.932
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.263
	CNS0095610	Silvery flower (tetraploid) 1	11.988
	CNS0095611	Silvery flower (tetraploid) 2	10.714
	CNS0095612	Silvery flower (tetraploid) 3	5.825
	CNS0095613	Golden flower (tetraploid) 1	2.077
	CNS0095614	Golden flower (tetraploid) 2	10.352
	CNS0095615	Golden flower (tetraploid) 3	1.842
CRA001975	CRR073297	Stem 1	74.418
	CRR073298	Stem 2	61.572
	CRR073299	Stem 3	73.781
	CRR073300	Leaf 1	38.230
	CRR073301	Leaf 2	38.585
	CRR073302	Leaf 3	34.127
	CRR073303	Juvenile bud 1	38.483
	CRR073304	Juvenile bud 2	32.948
	CRR073305	Juvenile bud 3	48.082
	CRR073306	Third green 1	62.933
	CRR073307	Third green 2	84.796
	CRR073308	Third green 3	74.793
	CRR073309	Second white 1	4.610
	CRR073310	Second white 2	8.385
	CRR073311	Second white 3	1.571
	CRR073312	Silver flowering 1	1.214
	CRR073313	Silver flowering 2	1.520
	CRR073314	Silver flowering 3	0.474
	CRR073315	Gold flowering 1	36.826
	CRR073316	Gold flowering 2	33.678
	CRR073317	Gold flowering 3	20.720
	CRR073318	Tawny withering 1	14.882
	CRR073319	Tawny withering 2	12.823
	CRR073320	Tawny withering 3	12.892