Detail information of GWHGAAZE023074


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285679.10PREDICTED: probable DNA primase large subunit [Vitis vinifera]
COGYP_007312256.10.0000001DNA primase, large subunit
Swissprottr|Q84WJ2|PRI2_ARATH0Probable DNA primase large subunit
trEMBLtr|D7TS99|D7TS99_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI33371.3}
TAIR10AT1G67320.20DNA primase, large subunit family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8297292782980435-
GWHAAZE00000006mRNA8297292782980435-
GWHAAZE00000006exon8297292782973052-
GWHAAZE00000006exon8297316082973253-
GWHAAZE00000006exon8297343382973518-
GWHAAZE00000006exon8297413882974212-
GWHAAZE00000006exon8297466582974724-
GWHAAZE00000006exon8297567882975737-
GWHAAZE00000006exon8297587282975961-
GWHAAZE00000006exon8297612582976172-
GWHAAZE00000006exon8297625182976299-
GWHAAZE00000006exon8297717582977239-
GWHAAZE00000006exon8297733682977466-
GWHAAZE00000006exon8297895082979007-
GWHAAZE00000006exon8297917582979234-
GWHAAZE00000006exon8297934882979429-
GWHAAZE00000006exon8297953282979635-
GWHAAZE00000006exon8297971382979774-
GWHAAZE00000006exon8298024982980435-
GWHAAZE00000006CDS8298024982980435-
GWHAAZE00000006CDS8297971382979774-
GWHAAZE00000006CDS8297953282979635-
GWHAAZE00000006CDS8297934882979429-
GWHAAZE00000006CDS8297917582979234-
GWHAAZE00000006CDS8297895082979007-
GWHAAZE00000006CDS8297733682977466-
GWHAAZE00000006CDS8297717582977239-
GWHAAZE00000006CDS8297625182976299-
GWHAAZE00000006CDS8297612582976172-
GWHAAZE00000006CDS8297587282975961-
GWHAAZE00000006CDS8297567882975737-
GWHAAZE00000006CDS8297466582974724-
GWHAAZE00000006CDS8297413882974212-
GWHAAZE00000006CDS8297343382973518-
GWHAAZE00000006CDS8297316082973253-
GWHAAZE00000006CDS8297292782973052-
Transcript Sequence

Network for GWHGAAZE023074

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04104.15DNA_primase_lrg1994636.40E-93
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02685PRI2 DNA replication map03030

Gene Ontology

GO term OntologyName
GO:0006269biological_processDNA replication, synthesis of RNA primer
GO:0016779molecular_functionnucleotidyltransferase activity
GO:0003896molecular_functionDNA primase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.248
SRR3591706second leaf2.954
SRR3591707mature leaf0.289
SRR3591708Shoot apex20.625
SRR3591709Stem3.319
SRR3591710White floral bud0.629
SRR3591711White flower0.427
SRR3591712Green floral bud0.906
SRR3591713Yellow flower0.066
SRP173429 SRR8316895Juvenile bud stage 3.893
SRR8316896Juvenile bud stage 6.733
SRR8316897Juvenile bud stage 3.028
SRR8316894Third green stage 1.232
SRR8316900Third green stage 2.422
SRR8316901Third green stage 1.871
SRR8316898Complete white stage 0.392
SRR8316899Complete white stage 3.607
SRR8316903Complete white stage 0.188
SRR8316902Silver flowering stage0.026
SRR8316904Silver flowering stage0.080
SRR8316905Silver flowering stage0.031
SRR8316906Gold flowering stage 0.056
SRR8316907Gold flowering stage 0.207
SRR8316908Gold flowering stage 0.260
SRP132670SRR6706286Control2.470
SRR6706287Light intensity 50%3.340
SRR6706288Light intensity 20%4.243
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.990
CNS0095593Slightly white alabastrum(diploid) 22.763
CNS0095594Slightly white alabastrum(diploid) 32.985
CNS0095595Whole white alabastrum(diploid) 21.503
CNS0095596Whole white alabastrum(diploid) 30.933
CNS0095597Whole white alabastrum(diploid) 40.792
CNS0095598Silvery flower (diploied) 12.980
CNS0095599Silvery flower (diploied) 23.565
CNS0095600Silvery flower (diploied) 30.884
CNS0095601Golden flower (diploid) 11.588
CNS0095602Golden flower (diploid) 20.566
CNS0095603Golden flower (diploid) 30.859
CNS0095604Slightly white alabastrum(tetraploid) 12.352
CNS0095605Slightly white alabastrum(tetraploid) 22.015
CNS0095606Slightly white alabastrum(tetraploid) 35.402
CNS0095607Whole white alabastrum(tetraploid) 11.526
CNS0095608Whole white alabastrum(tetraploid) 20.473
CNS0095609Whole white alabastrum(tetraploid) 32.195
CNS0095610Silvery flower (tetraploid) 10.144
CNS0095611Silvery flower (tetraploid) 20.122
CNS0095612Silvery flower (tetraploid) 30.251
CNS0095613Golden flower (tetraploid) 10.026
CNS0095614Golden flower (tetraploid) 20.047
CNS0095615Golden flower (tetraploid) 30.191
CRA001975CRR073297Stem 19.689
CRR073298Stem 28.233
CRR073299Stem 310.548
CRR073300Leaf 13.382
CRR073301Leaf 22.302
CRR073302Leaf 32.077
CRR073303Juvenile bud 12.331
CRR073304Juvenile bud 21.290
CRR073305Juvenile bud 32.145
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.174
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.307
CRR073316Gold flowering 21.066
CRR073317Gold flowering 30.474
CRR073318Tawny withering 16.072
CRR073319Tawny withering 27.952
CRR073320Tawny withering 311.630