Detail information of GWHGAAZE023084


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043907.14.38363E-83Teosinte branched 1 isoform 1 [Theobroma cacao]
Swissprottr|Q9LSD5|TCP20_ARATH2E-54Transcription factor TCP20
trEMBLtr|A0A061E406|A0A061E406_THECC2E-83Teosinte branched 1 isoform 1 {ECO:0000313|EMBL:EOX99739.1}
TAIR10AT3G27010.11E-44TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8316057283161216+
GWHAAZE00000006mRNA8316057283161216+
GWHAAZE00000006exon8316057283160905+
GWHAAZE00000006exon8316094583161216+
GWHAAZE00000006CDS8316057283160905+
GWHAAZE00000006CDS8316094583161216+
Transcript Sequence

Network for GWHGAAZE023084

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03634.14TCP1731.50E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTCP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.347
SRR3591706second leaf8.438
SRR3591707mature leaf16.818
SRR3591708Shoot apex4.883
SRR3591709Stem20.984
SRR3591710White floral bud3.539
SRR3591711White flower5.152
SRR3591712Green floral bud4.480
SRR3591713Yellow flower1.423
SRP173429 SRR8316895Juvenile bud stage 3.333
SRR8316896Juvenile bud stage 4.019
SRR8316897Juvenile bud stage 1.347
SRR8316894Third green stage 0.888
SRR8316900Third green stage 3.435
SRR8316901Third green stage 3.870
SRR8316898Complete white stage 0.292
SRR8316899Complete white stage 7.352
SRR8316903Complete white stage 1.274
SRR8316902Silver flowering stage1.011
SRR8316904Silver flowering stage0.689
SRR8316905Silver flowering stage0.600
SRR8316906Gold flowering stage 1.393
SRR8316907Gold flowering stage 1.412
SRR8316908Gold flowering stage 1.412
SRP132670SRR6706286Control5.151
SRR6706287Light intensity 50%4.550
SRR6706288Light intensity 20%5.550
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.366
CNS0095593Slightly white alabastrum(diploid) 25.126
CNS0095594Slightly white alabastrum(diploid) 33.367
CNS0095595Whole white alabastrum(diploid) 24.372
CNS0095596Whole white alabastrum(diploid) 31.114
CNS0095597Whole white alabastrum(diploid) 41.893
CNS0095598Silvery flower (diploied) 15.212
CNS0095599Silvery flower (diploied) 25.963
CNS0095600Silvery flower (diploied) 32.535
CNS0095601Golden flower (diploid) 13.434
CNS0095602Golden flower (diploid) 23.488
CNS0095603Golden flower (diploid) 32.952
CNS0095604Slightly white alabastrum(tetraploid) 17.020
CNS0095605Slightly white alabastrum(tetraploid) 23.433
CNS0095606Slightly white alabastrum(tetraploid) 312.821
CNS0095607Whole white alabastrum(tetraploid) 15.045
CNS0095608Whole white alabastrum(tetraploid) 22.121
CNS0095609Whole white alabastrum(tetraploid) 33.298
CNS0095610Silvery flower (tetraploid) 11.504
CNS0095611Silvery flower (tetraploid) 22.772
CNS0095612Silvery flower (tetraploid) 32.303
CNS0095613Golden flower (tetraploid) 10.727
CNS0095614Golden flower (tetraploid) 23.992
CNS0095615Golden flower (tetraploid) 30.825
CRA001975CRR073297Stem 17.428
CRR073298Stem 28.044
CRR073299Stem 37.405
CRR073300Leaf 14.334
CRR073301Leaf 25.068
CRR073302Leaf 37.076
CRR073303Juvenile bud 16.482
CRR073304Juvenile bud 21.083
CRR073305Juvenile bud 36.478
CRR073306Third green 114.428
CRR073307Third green 211.479
CRR073308Third green 38.404
CRR073309Second white 18.082
CRR073310Second white 26.331
CRR073311Second white 32.442
CRR073312Silver flowering 13.196
CRR073313Silver flowering 24.374
CRR073314Silver flowering 32.028
CRR073315Gold flowering 112.677
CRR073316Gold flowering 213.024
CRR073317Gold flowering 39.227
CRR073318Tawny withering 135.555
CRR073319Tawny withering 216.795
CRR073320Tawny withering 337.340