Gene detail

Detail information of GWHGAAZE023090

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758966.1	0	PREDICTED: exocyst complex component EXO70B1-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FGH9\|E70B1_ARATH	2E-117	Exocyst complex component EXO70B1
trEMBL	tr\|F6I1N2\|F6I1N2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60849.1}
TAIR10	AT5G13150.1	6E-167	exocyst subunit exo70 family protein C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83252321	83253646	-
GWHAAZE00000006	mRNA	83252321	83253646	-
GWHAAZE00000006	exon	83252947	83253646	-
GWHAAZE00000006	exon	83252321	83252913	-
GWHAAZE00000006	CDS	83252947	83253646	-
GWHAAZE00000006	CDS	83252321	83252913	-

Transcript Sequence
>GWHTAAZE023120 ATGACCAAAATAGCGACGGCTATGGTCTCCGCTGGATACGAGACCGAGTGTTGCCAGGTTTATACTATTGCCAGGCGTAACGCGTTTGATGAACAAATGAAAAAGCTCGAATTTGAGAAGCTAAACATCGAGGATGTGCAGAAGATGCATTGGGAGCCACTGGAAGGAGAGGTGGCTAGATGGATCAGGATCGTCAAAAAGTGCTCCACTGTTCTATTCCCAGGCGAACACAAACTAGGCGAGGCTGTATTCGCGGATTATCCGGTGATCCATCGGAGCCTCTTTGGCAACCTCGCACGTGCGGTTGTTATACAGCTACTTGATTTTGCGGAGGCCATTGCAATGACAAAGCGATCGGCTGAGAAATTGTTCAAATTCCTTGATATGTACGAGACTCTCCGCGATCTCATCCCCGCAGTCGTTCCTTCGCCTTCTACCGACTATTGTGAGCACGAACTGAAATCTGAGATCAATGCCGCAGGCAACCGTATCGGAGAGGCAGTTGTGAATATCTTCTGCGATCTCGAGAACTCAATCAAGAGCGATGTTGCAAAAACTCCGGTCCCTGGGGGAGCAGTGCACCCCCTGACACGCTACGTGATGAACTATCTAAAGTACGCCTGTGAGTACAAAGACACACTGGAACAGATCTTCCAACAACACGCGAAGCTCGAGAAGACAGAAACAACAACTAGATCGGCCAACTTGTCGCCGGTCTCAGCACAATTATTGGCAGTTATGGACCTGTTAGACTCAAATCTGGAAGCAAAATCAAGGCTCTATAAGGACCTCTCACTGCGCTACATATTCCTAATGAATAACGGGAGATACATATTACAGAAGGTGAAAGGATCTGCCGAGATCCACCAACTGATGGGGAACACGTGGTGCAGGAGGCGATCCACGGAGGTAAGGCAATTCCACAAGAACTATCAGAGAGAGACATGGGGCAGACTTTTGCAGTGCTTAGGTCACGAAGGATTGCAGGTGAATGGTAAGGTGCAAAAGCCAGTGCTAAAGGAGAGGTTTAAAAACTTCAATACAATGTTTGATGAGATACACAAAACGCAGAGTACATGGGTGGTAAGTGATGAGCAACTTCTATCGGAGCTTAGGGTTTCGGTATCGGCGGTGGTGATACCGGCATATCGCTCATTTGTAGGTAGGTTCAGTCAGTACTTCGACGGTGGAAGACAAACGGAGAAGTACATAAAGTATCAGCCAGAAGATATCGAGATGCTAATTGAGGGACTGTTTGATGGCAATCCCACGTCCATGGGTAGGAGGAGATAG

Network for GWHGAAZE023090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03081.16	Exo70	60	416	4.10E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07195	EXOC7, EXO70	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name
GO:0006887	biological_process	exocytosis
GO:0000145	cellular_component	exocyst

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.152
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.273
	SRR3591709	Stem	0.329
	SRR3591710	White floral bud	13.486
	SRR3591711	White flower	0.678
	SRR3591712	Green floral bud	31.361
	SRR3591713	Yellow flower	0.209
SRP173429	SRR8316895	Juvenile bud stage	0.058
	SRR8316896	Juvenile bud stage	0.397
	SRR8316897	Juvenile bud stage	0.620
	SRR8316894	Third green stage	1.582
	SRR8316900	Third green stage	30.606
	SRR8316901	Third green stage	29.636
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.248
	SRR8316903	Complete white stage	0.079
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.168
	SRR8316905	Silver flowering stage	0.060
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	15.887
	SRR6706287	Light intensity 50%	15.320
	SRR6706288	Light intensity 20%	12.885
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.486
	CNS0095593	Slightly white alabastrum(diploid) 2	7.162
	CNS0095594	Slightly white alabastrum(diploid) 3	3.612
	CNS0095595	Whole white alabastrum(diploid) 2	30.184
	CNS0095596	Whole white alabastrum(diploid) 3	41.244
	CNS0095597	Whole white alabastrum(diploid) 4	29.523
	CNS0095598	Silvery flower (diploied) 1	0.148
	CNS0095599	Silvery flower (diploied) 2	2.440
	CNS0095600	Silvery flower (diploied) 3	0.793
	CNS0095601	Golden flower (diploid) 1	0.555
	CNS0095602	Golden flower (diploid) 2	0.541
	CNS0095603	Golden flower (diploid) 3	0.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.281
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	68.849
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.381
	CNS0095610	Silvery flower (tetraploid) 1	0.329
	CNS0095611	Silvery flower (tetraploid) 2	1.534
	CNS0095612	Silvery flower (tetraploid) 3	3.266
	CNS0095613	Golden flower (tetraploid) 1	0.382
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	2.143
CRA001975	CRR073297	Stem 1	1.034
	CRR073298	Stem 2	1.079
	CRR073299	Stem 3	0.525
	CRR073300	Leaf 1	31.031
	CRR073301	Leaf 2	26.069
	CRR073302	Leaf 3	14.289
	CRR073303	Juvenile bud 1	24.116
	CRR073304	Juvenile bud 2	28.032
	CRR073305	Juvenile bud 3	1.060
	CRR073306	Third green 1	6.496
	CRR073307	Third green 2	7.461
	CRR073308	Third green 3	6.317
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.940
	CRR073311	Second white 3	1.177
	CRR073312	Silver flowering 1	6.499
	CRR073313	Silver flowering 2	7.332
	CRR073314	Silver flowering 3	3.115
	CRR073315	Gold flowering 1	6.204
	CRR073316	Gold flowering 2	1.102
	CRR073317	Gold flowering 3	1.941
	CRR073318	Tawny withering 1	6.316
	CRR073319	Tawny withering 2	4.625
	CRR073320	Tawny withering 3	4.472